Annotation Detail for ECM1
Basic Information Top
| Gene Symbol: | ECM1 ( - ) |
|---|---|
| Gene Full Name: | extracellular matrix protein 1 |
| Band: | 1q21.2 |
| Quick Links | Entrez ID:1893; OMIM: 602201; Uniprot ID:ECM1_HUMAN; ENSEMBL ID: ENSG00000143369; HGNC ID: 3153 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.81071
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 6 / 70761 | 84 |  |
| blastocyst | 1 / 62319 | 16 |  |
| fetus | 33 / 564012 | 58 | |
| neonate | 5 / 31097 | 160 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 5 / 55556 | 89 | |
| adult | 365 / 1939121 | 188 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 4 / 17475 | 228 |  |
| breast (mammary gland) tumor | 85 / 94178 | 902 | |
| cervical tumor | 6 / 34366 | 174 | |
| chondrosarcoma | 16 / 82823 | 193 | |
| colorectal tumor | 2 / 114246 | 17 | |
| esophageal tumor | 11 / 17290 | 636 | |
| gastrointestinal tumor | 44 / 119369 | 368 | |
| germ cell tumor | 45 / 263845 | 170 | |
| glioma | 6 / 106883 | 56 | |
| head and neck tumor | 36 / 136302 | 264 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 2 / 95842 | 20 | |
| liver tumor | 2 / 96359 | 20 | |
| lung tumor | 2 / 103127 | 19 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 42 / 97250 | 431 | |
| normal | 351 / 3360307 | 104 | |
| ovarian tumor | 1 / 76682 | 13 | |
| pancreatic tumor | 4 / 104616 | 38 | |
| primitive neuroectodermal tumor of the CNS | 4 / 125680 | 31 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 37 / 124949 | 296 | |
| soft tissue/muscle tissue tumor | 1 / 125191 | 7 |  |
| uterine tumor | 2 / 90257 | 22 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 7 / 33197 | 210 | |
| ascites | 28 / 40015 | 699 | |
| bladder | 4 / 29757 | 134 | |
| blood | 2 / 123478 | 16 | |
| bone | 10 / 71655 | 139 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 58 / 1100989 | 52 | |
| cervix | 12 / 48171 | 249 | |
| connective tissue | 45 / 149255 | 301 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 7 / 215722 | 32 | |
| esophagus | 17 / 20209 | 841 | |
| eye | 12 / 211054 | 56 | |
| heart | 21 / 89626 | 234 | |
| intestine | 13 / 234472 | 55 | |
| kidney | 9 / 211777 | 42 | |
| larynx | 0 / 24145 | 0 | |
| liver | 10 / 207743 | 48 | |
| lung | 14 / 336974 | 41 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 1 / 91610 | 10 | |
| mammary gland | 88 / 153271 | 574 | |
| mouth | 4 / 67052 | 59 | |
| muscle | 4 / 107715 | 37 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 4 / 102051 | 39 | |
| pancreas | 7 / 214812 | 32 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 5 / 41328 | 120 | |
| pituitary gland | 1 / 16585 | 60 | |
| placenta | 95 / 280825 | 338 | |
| prostate | 10 / 189345 | 52 | |
| salivary gland | 1 / 20155 | 49 | |
| skin | 65 / 210574 | 308 | |
| spleen | 11 / 53952 | 203 | |
| stomach | 22 / 96619 | 227 | |
| testis | 33 / 330442 | 99 | |
| thymus | 2 / 81131 | 24 | |
| thyroid | 30 / 47473 | 631 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 3 / 52413 | 57 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 33 / 232878 | 141 | |
| vascular | 3 / 51780 | 57 | |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 209365_s_at
| Cell line | Expression level | Expression bar |
|---|---|---|
| ||
| 721_B_lymphoblasts | 4.7 | |
| Adipocyte | 42.8 | |
| AdrenalCortex | 7.5 | |
| Adrenalgland | 6.35 | |
| Amygdala | 5.65 | |
| Appendix | 5.7 | |
| AtrioventricularNode | 4.5 | |
| BDCA4+_DentriticCells | 4.55 | |
| Bonemarrow | 5.4 | |
| BronchialEpithelialCells | 8.5 | |
| CD105+_Endothelial | 5.5 | |
| CD14+_Monocytes | 4.9 | |
| CD19+_BCells(neg._sel.) | 4.85 | |
| CD33+_Myeloid | 6.8 | |
| CD34+ | 6.9 | |
| CD4+_Tcells | 5.55 | |
| CD56+_NKCells | 5.8 | |
| CD71+_EarlyErythroid | 5.15 | |
| CD8+_Tcells | 3.25 | |
| CardiacMyocytes | 16.3 | |
| Caudatenucleus | 4.95 | |
| Cerebellum | 4.5 | |
| CerebellumPeduncles | 6.25 | |
| CiliaryGanglion | 4.95 | |
| CingulateCortex | 6.3 | |
| Colorectaladenocarcinoma | 5 | |
| DorsalRootGanglion | 4.9 | |
| FetalThyroid | 5.45 | |
| Fetalbrain | 5.5 | |
| Fetalliver | 12 | |
| Fetallung | 5 | |
| GlobusPallidus | 5.55 | |
| Heart | 11.7 | |
| Hypothalamus | 5.9 | |
| Kidney | 4.7 | |
| Leukemia_chronicMyelogenousK-562 | 7.5 | |
| Leukemia_promyelocytic-HL-60 | 4.6 | |
| Leukemialymphoblastic(MOLT-4) | 4.45 | |
| Liver | 29.5 | |
| Lung | 10.25 | |
| Lymphnode | 4.65 | |
| Lymphoma_burkitts(Daudi) | 6.8 | |
| Lymphoma_burkitts(Raji) | 7.9 | |
| MedullaOblongata | 5 | |
| OccipitalLobe | 4.7 | |
| OlfactoryBulb | 8.2 | |
| Ovary | 3.8 | |
| Pancreas | 5.9 | |
| PancreaticIslet | 6 | |
| ParietalLobe | 6.15 | |
| Pituitary | 6.55 | |
| Placenta | 52.75 | |
| Pons | 5.2 | |
| PrefrontalCortex | 7.35 | |
| Prostate | 6.55 | |
| Salivarygland | 4.4 | |
| SkeletalMuscle | 7.3 | |
| Skin | 5.2 | |
| SmoothMuscle | 41.65 | |
| Spinalcord | 5.9 | |
| SubthalamicNucleus | 6.7 | |
| SuperiorCervicalGanglion | 7.2 | |
| TemporalLobe | 5.05 | |
| Testis | 4.65 | |
| TestisGermCell | 7 | |
| TestisIntersitial | 4.9 | |
| TestisLeydigCell | 12.5 | |
| TestisSeminiferousTubule | 5.05 | |
| Thalamus | 5.6 | |
| Thymus | 3.95 | |
| Thyroid | 6.85 | |
| Tongue | 295.7 | |
| Tonsil | 28.8 | |
| Trachea | 4.8 | |
| TrigeminalGanglion | 7.3 | |
| Uterus | 11.6 | |
| UterusCorpus | 16.65 | |
| WholeBlood | 5.95 | |
| Wholebrain | 4.75 | |
| colon | 5.25 | |
| pineal_day | 7.66 | |
| pineal_night | 7.02 | |
| retina | 6.475 | |
| small_intestine | 4.95 | |
- Probe name: CUST_17110_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 4.53 ± 0.88 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 4.29 ± 0.68 | |
| Basal Part of Pons | 5.2 ± 0.52 | |
| Cerebellar Cortex | 4.34 ± 0.54 | |
| Cerebellar Nuclei | 4.87 ± 0.48 | |
| Claustrum | 3.98 ± 0.78 | |
| Epithalamus | 4.03 ± 0.68 | |
| Frontal Lobe | 4.69 ± 0.63 | |
| Globus Pallidus | 3.83 ± 0.58 | |
| Hypothalamus | 4.07 ± 0.55 | |
| Insula | 4.6 ± 0.41 | |
| Limbic Lobe | 4.28 ± 0.61 | |
| Mesencephalon | 4.35 ± 0.69 | |
| Myelencephalon | 4.53 ± 0.74 | |
| Occipital Lobe | 4.81 ± 0.41 | |
| Parietal Lobe | 4.8 ± 0.61 | |
| Pontine Tegmentum | 4.35 ± 0.54 | |
| Striatum | 4.02 ± 0.79 | |
| Subthalamus | 5.53 ± 0.24 | |
| Temporal Lobe | 4.44 ± 0.56 | |
| Thalamus | 4.43 ± 0.53 | |
| White Matter | 3.18 ± 0.52 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Ecm1 | CB | Cerebellum | 13.21 | |
| 16.75 | | |||
| Ecm1 | CTX | Cerebral cortex | 25.42 | |
| 17.9 | | |||
| Ecm1 | HIP | Hippocampal region | 11.33 | |
| 10.55 | | |||
| Ecm1 | HPF | Hippocampal formation | 14.22 | |
| 12.06 | | |||
| Ecm1 | HY | Hypothalamus | 6.01 | |
| 4.79 | | |||
| Ecm1 | LSX | Lateral septal complex | 1.81 | |
| 1.28 | | |||
| Ecm1 | MB | Midbrain | 7.58 | |
| 7.2 | | |||
| Ecm1 | MY | Medulla | 16.18 | |
| 17.72 | | |||
| Ecm1 | OLF | Olfactory bulb | 25.44 | |
| 17.83 | | |||
| Ecm1 | P | Pons | 13.81 | |
| 14.99 | | |||
| Ecm1 | PAL | Pallidum | 8.81 | |
| 7.36 | | |||
| Ecm1 | RHP | Retrohippocampal region | 20.35 | |
| 15 | | |||
| Ecm1 | sAMY | Striatum-like amygdalar nuclei | 9.81 | |
| 7 | | |||
| Ecm1 | STR | Striatum | 10.53 | |
| 7.2 | | |||
| Ecm1 | STRd | Striatum dorsal region | 10.63 | |
| 7.54 | | |||
| Ecm1 | STRv | Striatum ventral region | 12.83 | |
| 7.76 | | |||
| Ecm1 | TH | Thalamus | 20.75 | |
| 16.3 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| ECM1_HUMAN_333 | 10 | 333 | 342 | ELLALIQLER | PRIDE |
| PAp00044002 | 12 | 116 | 127 | ELPSLQHPNEQK | Peptide Atlas |