Annotation Detail for ABCA1
Basic Information Top
| Gene Symbol: | ABCA1 ( ABC-1,ABC1,CERP,FLJ14958,HDLDT1,MGC164864,MGC165011,TGD ) |
|---|---|
| Gene Full Name: | ATP-binding cassette, sub-family A (ABC1), member 1 |
| Band: | 9q31.1 |
| Quick Links | Entrez ID:19; OMIM: 600046; Uniprot ID:ABCA1_HUMAN; ENSEMBL ID: ENSG00000165029; HGNC ID: 29 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.728215
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 2 / 70761 | 28 |  |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 14 / 564012 | 24 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 66 / 1939121 | 34 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 1 / 94178 | 10 |  |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 2 / 114246 | 17 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 3 / 119369 | 25 | |
| germ cell tumor | 1 / 263845 | 3 | |
| glioma | 8 / 106883 | 74 |  |
| head and neck tumor | 7 / 136302 | 51 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 4 / 95842 | 41 | |
| liver tumor | 1 / 96359 | 10 | |
| lung tumor | 2 / 103127 | 19 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 1 / 97250 | 10 | |
| normal | 89 / 3360307 | 26 | |
| ovarian tumor | 1 / 76682 | 13 | |
| pancreatic tumor | 2 / 104616 | 19 | |
| primitive neuroectodermal tumor of the CNS | 1 / 125680 | 7 | |
| prostate cancer | 1 / 102680 | 9 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 1 / 124949 | 8 | |
| soft tissue/muscle tissue tumor | 1 / 125191 | 7 | |
| uterine tumor | 4 / 90257 | 44 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 3 / 13106 | 228 |  |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 3 / 123478 | 24 | |
| bone | 1 / 71655 | 13 | |
| bone marrow | 1 / 48801 | 20 | |
| brain | 28 / 1100989 | 25 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 5 / 16212 | 308 | |
| embryonic tissue | 4 / 215722 | 18 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 1 / 211054 | 4 | |
| heart | 0 / 89626 | 0 | |
| intestine | 2 / 234472 | 8 | |
| kidney | 10 / 211777 | 47 | |
| larynx | 1 / 24145 | 41 | |
| liver | 7 / 207743 | 33 | |
| lung | 7 / 336974 | 20 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 5 / 91610 | 54 | |
| mammary gland | 2 / 153271 | 13 | |
| mouth | 1 / 67052 | 14 | |
| muscle | 4 / 107715 | 37 | |
| nerve | 2 / 15768 | 126 | |
| ovary | 1 / 102051 | 9 | |
| pancreas | 3 / 214812 | 13 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 1 / 41328 | 24 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 15 / 280825 | 53 | |
| prostate | 3 / 189345 | 15 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 2 / 210574 | 9 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 7 / 96619 | 72 | |
| testis | 4 / 330442 | 12 | |
| thymus | 1 / 81131 | 12 | |
| thyroid | 4 / 47473 | 84 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 2 / 52413 | 38 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 7 / 232878 | 30 | |
| vascular | 3 / 51780 | 57 | |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 203504_s_at
| Cell line | Expression level | Expression bar |
|---|---|---|
| ||
| 721_B_lymphoblasts | 6.35 | |
| Adipocyte | 30.4 | |
| AdrenalCortex | 13.95 | |
| Adrenalgland | 15.9 | |
| Amygdala | 5.9 | |
| Appendix | 9.7 | |
| AtrioventricularNode | 4.4 | |
| BDCA4+_DentriticCells | 6.05 | |
| Bonemarrow | 5.45 | |
| BronchialEpithelialCells | 5.7 | |
| CD105+_Endothelial | 5.55 | |
| CD14+_Monocytes | 5.8 | |
| CD19+_BCells(neg._sel.) | 8.2 | |
| CD33+_Myeloid | 6.9 | |
| CD34+ | 6.7 | |
| CD4+_Tcells | 5.7 | |
| CD56+_NKCells | 6.4 | |
| CD71+_EarlyErythroid | 5.05 | |
| CD8+_Tcells | 5.05 | |
| CardiacMyocytes | 10.5 | |
| Caudatenucleus | 5 | |
| Cerebellum | 4.5 | |
| CerebellumPeduncles | 6.25 | |
| CiliaryGanglion | 4.4 | |
| CingulateCortex | 5.75 | |
| Colorectaladenocarcinoma | 5.45 | |
| DorsalRootGanglion | 4.65 | |
| FetalThyroid | 5.35 | |
| Fetalbrain | 6.7 | |
| Fetalliver | 79 | |
| Fetallung | 15.2 | |
| GlobusPallidus | 4.2 | |
| Heart | 7.75 | |
| Hypothalamus | 6.15 | |
| Kidney | 4.75 | |
| Leukemia_chronicMyelogenousK-562 | 4.95 | |
| Leukemia_promyelocytic-HL-60 | 4.9 | |
| Leukemialymphoblastic(MOLT-4) | 4.3 | |
| Liver | 7.75 | |
| Lung | 5.95 | |
| Lymphnode | 6.3 | |
| Lymphoma_burkitts(Daudi) | 7.25 | |
| Lymphoma_burkitts(Raji) | 7.95 | |
| MedullaOblongata | 5.1 | |
| OccipitalLobe | 4.9 | |
| OlfactoryBulb | 9.25 | |
| Ovary | 3.8 | |
| Pancreas | 4.6 | |
| PancreaticIslet | 6 | |
| ParietalLobe | 5.8 | |
| Pituitary | 6.45 | |
| Placenta | 16.7 | |
| Pons | 5.35 | |
| PrefrontalCortex | 6.9 | |
| Prostate | 6.35 | |
| Salivarygland | 4.6 | |
| SkeletalMuscle | 7.1 | |
| Skin | 4.95 | |
| SmoothMuscle | 93.05 | |
| Spinalcord | 7.05 | |
| SubthalamicNucleus | 5.15 | |
| SuperiorCervicalGanglion | 6.7 | |
| TemporalLobe | 5.1 | |
| Testis | 4.75 | |
| TestisGermCell | 6.15 | |
| TestisIntersitial | 4.7 | |
| TestisLeydigCell | 5.5 | |
| TestisSeminiferousTubule | 4.75 | |
| Thalamus | 5.65 | |
| Thymus | 4.25 | |
| Thyroid | 7.05 | |
| Tongue | 6.1 | |
| Tonsil | 5.4 | |
| Trachea | 4.65 | |
| TrigeminalGanglion | 6.05 | |
| Uterus | 6.45 | |
| UterusCorpus | 45.8 | |
| WholeBlood | 22.25 | |
| Wholebrain | 4.45 | |
| colon | 18.6 | |
| pineal_day | 6.92 | |
| pineal_night | 7.18 | |
| retina | 16.1 | |
| small_intestine | 5.4 | |
- Probe name: A_24_P235429
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 5.79 ± 0.49 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 6.59 ± 0.2 | |
| Basal Part of Pons | 4.58 ± 0.37 | |
| Cerebellar Cortex | 4.9 ± 0.39 | |
| Cerebellar Nuclei | 5.04 ± 0.61 | |
| Claustrum | 4.95 ± 0.82 | |
| Epithalamus | 6.59 ± 0.49 | |
| Frontal Lobe | 5.37 ± 0.6 | |
| Globus Pallidus | 7.99 ± 0.93 | |
| Hypothalamus | 6.06 ± 0.36 | |
| Insula | 5.63 ± 0.28 | |
| Limbic Lobe | 5.27 ± 0.85 | |
| Mesencephalon | 6.17 ± 0.81 | |
| Myelencephalon | 5.78 ± 0.83 | |
| Occipital Lobe | 6.03 ± 0.56 | |
| Parietal Lobe | 5.48 ± 0.63 | |
| Pontine Tegmentum | 5.73 ± 0.5 | |
| Striatum | 7.26 ± 0.81 | |
| Subthalamus | 4.97 ± 0.33 | |
| Temporal Lobe | 5.43 ± 0.49 | |
| Thalamus | 6.09 ± 0.64 | |
| White Matter | 5.2 ± 1.14 | |
Mouse Brain ISH 