Annotation Detail for PGAM5
Basic Information Top
| Gene Symbol: | PGAM5 ( BXLBV68,MGC5352 ) |
|---|---|
| Gene Full Name: | phosphoglycerate mutase family member 5 |
| Band: | 12q24.33 |
| Quick Links | Entrez ID:192111; OMIM: NA; Uniprot ID:PGAM5_HUMAN; ENSEMBL ID: ENSG00000176894; HGNC ID: 28763 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.102558
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 1 / 70761 | 14 |  |
| blastocyst | 5 / 62319 | 80 |  |
| fetus | 1 / 564012 | 1 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 22 / 1939121 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 2 / 17475 | 114 | |
| breast (mammary gland) tumor | 2 / 94178 | 21 | |
| cervical tumor | 2 / 34366 | 58 | |
| chondrosarcoma | 1 / 82823 | 12 | |
| colorectal tumor | 1 / 114246 | 8 |  |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 2 / 119369 | 16 | |
| germ cell tumor | 8 / 263845 | 30 | |
| glioma | 3 / 106883 | 28 | |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 5 / 95842 | 52 | |
| liver tumor | 9 / 96359 | 93 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 1 / 71755 | 13 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 31 / 3360307 | 9 | |
| ovarian tumor | 1 / 76682 | 13 | |
| pancreatic tumor | 2 / 104616 | 19 | |
| primitive neuroectodermal tumor of the CNS | 9 / 125680 | 71 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 1 / 46356 | 21 | |
| skin tumor | 3 / 124949 | 24 | |
| soft tissue/muscle tissue tumor | 3 / 125191 | 23 | |
| uterine tumor | 1 / 90257 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 1 / 40015 | 24 | |
| bladder | 3 / 29757 | 100 | |
| blood | 3 / 123478 | 24 | |
| bone | 1 / 71655 | 13 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 10 / 1100989 | 9 | |
| cervix | 5 / 48171 | 103 | |
| connective tissue | 1 / 149255 | 6 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 7 / 215722 | 32 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 2 / 211054 | 9 | |
| heart | 0 / 89626 | 0 | |
| intestine | 4 / 234472 | 17 | |
| kidney | 2 / 211777 | 9 | |
| larynx | 0 / 24145 | 0 | |
| liver | 9 / 207743 | 43 | |
| lung | 2 / 336974 | 5 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 2 / 153271 | 13 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 1 / 107715 | 9 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 6 / 102051 | 58 | |
| pancreas | 3 / 214812 | 13 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 3 / 280825 | 10 | |
| prostate | 6 / 189345 | 31 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 3 / 210574 | 14 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 1 / 96619 | 10 | |
| testis | 5 / 330442 | 15 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 1 / 16999 | 58 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 4 / 232878 | 17 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: A_23_P426398
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 3.64 ± 0.74 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 3.8 ± 0.3 | |
| Basal Part of Pons | 3.6 ± 0.62 | |
| Cerebellar Cortex | 3.7 ± 0.54 | |
| Cerebellar Nuclei | 3.38 ± 0.65 | |
| Claustrum | 3.67 ± 0.76 | |
| Epithalamus | 3.07 ± 0.57 | |
| Frontal Lobe | 3.79 ± 0.54 | |
| Globus Pallidus | 2.78 ± 0.54 | |
| Hypothalamus | 3.21 ± 0.5 | |
| Insula | 3.72 ± 0.43 | |
| Limbic Lobe | 3.82 ± 0.56 | |
| Mesencephalon | 3.57 ± 0.79 | |
| Myelencephalon | 3.56 ± 0.61 | |
| Occipital Lobe | 3.3 ± 0.72 | |
| Parietal Lobe | 3.46 ± 0.63 | |
| Pontine Tegmentum | 3.49 ± 0.62 | |
| Striatum | 2.9 ± 0.86 | |
| Subthalamus | 3.12 ± 0.69 | |
| Temporal Lobe | 3.74 ± 0.52 | |
| Thalamus | 3.27 ± 0.63 | |
| White Matter | 2.77 ± 0.22 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Pgam5 | CB | Cerebellum | 15.98 | |
| 17.74 | | |||
| Pgam5 | CTX | Cerebral cortex | 76.13 | |
| 67.41 | | |||
| Pgam5 | HIP | Hippocampal region | 43.35 | |
| 81.61 | | |||
| Pgam5 | HPF | Hippocampal formation | 57.4 | |
| 78.16 | | |||
| Pgam5 | HY | Hypothalamus | 14.97 | |
| 12.47 | | |||
| Pgam5 | LSX | Lateral septal complex | 22.21 | |
| 18.03 | | |||
| Pgam5 | MB | Midbrain | 26.84 | |
| 25.13 | | |||
| Pgam5 | MY | Medulla | 26.8 | |
| 28.38 | | |||
| Pgam5 | OLF | Olfactory bulb | 49.94 | |
| 45.04 | | |||
| Pgam5 | P | Pons | 27.61 | |
| 29.7 | | |||
| Pgam5 | PAL | Pallidum | 16.49 | |
| 15.7 | | |||
| Pgam5 | RHP | Retrohippocampal region | 85.78 | |
| 79.77 | | |||
| Pgam5 | sAMY | Striatum-like amygdalar nuclei | 16.97 | |
| 14.07 | | |||
| Pgam5 | STR | Striatum | 19.12 | |
| 15.04 | | |||
| Pgam5 | STRd | Striatum dorsal region | 17.51 | |
| 14.09 | | |||
| Pgam5 | STRv | Striatum ventral region | 23.8 | |
| 16.7 | | |||
| Pgam5 | TH | Thalamus | 32.14 | |
| 31.35 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00003542 | 12 | 105 | 116 | HSQYHVDGSLEK | Peptide Atlas |