AutismKB 2.0

Annotation Detail for SCAMP5


View Evidences View Variants View Annotations
Basic Information Top
Gene Symbol:SCAMP5 ( DKFZp686L1799,MGC24969 )
Gene Full Name: secretory carrier membrane protein 5
Band: 15q24.2
Quick LinksEntrez ID:192683; OMIM: NA; Uniprot ID:SCAM5_HUMAN; ENSEMBL ID: ENSG00000198794; HGNC ID: 30386
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body6 / 7076184
blastocyst4 / 6231964
fetus28 / 56401249
neonate0 / 310970 
infant4 / 23620169
juvenile2 / 5555635
adult69 / 193912135
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma1 / 1747557
breast (mammary gland) tumor8 / 9417884
cervical tumor2 / 3436658
chondrosarcoma0 / 828230 
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor1 / 1193698
germ cell tumor11 / 26384541
glioma10 / 10688393
head and neck tumor1 / 1363027
kidney tumor5 / 6895972
leukemia2 / 9584220
liver tumor13 / 96359134
lung tumor2 / 10312719
lymphoma0 / 717550 
non-neoplasia4 / 9725041
normal244 / 336030772
ovarian tumor2 / 7668226
pancreatic tumor4 / 10461638
primitive neuroectodermal tumor of the CNS20 / 125680159
prostate cancer0 / 1026800 
retinoblastoma1 / 4635621
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor1 / 1251917
uterine tumor1 / 9025711
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland4 / 33197120
ascites0 / 400150 
bladder2 / 2975767
blood2 / 12347816
bone0 / 716550 
bone marrow0 / 488010 
brain225 / 1100989204
cervix2 / 4817141
connective tissue2 / 14925513
ear0 / 162120 
embryonic tissue12 / 21572255
esophagus0 / 202090 
eye13 / 21105461
heart1 / 8962611
intestine2 / 2344728
kidney6 / 21177728
larynx0 / 241450 
liver14 / 20774367
lung4 / 33697411
lymph0 / 442700 
lymph node0 / 916100 
mammary gland8 / 15327152
mouth1 / 6705214
muscle2 / 10771518
nerve1 / 1576863
ovary2 / 10205119
pancreas4 / 21481218
parathyroid3 / 20539146
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta3 / 28082510
prostate1 / 1893455
salivary gland0 / 201550 
skin0 / 2105740 
spleen0 / 539520 
stomach2 / 9661920
testis12 / 33044236
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus1 / 2328784
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 212699_at
Cell line Expression level Expression bar
721_B_lymphoblasts11.1
Adipocyte8.8
AdrenalCortex8.75
Adrenalgland7.15
Amygdala98.05
Appendix8.9
AtrioventricularNode6.05
BDCA4+_DentriticCells233.5
Bonemarrow8.7
BronchialEpithelialCells8.95
CD105+_Endothelial9.05
CD14+_Monocytes9.1
CD19+_BCells(neg._sel.)9.3
CD33+_Myeloid10.8
CD34+11.1
CD4+_Tcells9.4
CD56+_NKCells10.5
CD71+_EarlyErythroid8.3
CD8+_Tcells8.15
CardiacMyocytes10.9
Caudatenucleus78.7
Cerebellum101.5
CerebellumPeduncles113
CiliaryGanglion5.55
CingulateCortex100.7
Colorectaladenocarcinoma9
DorsalRootGanglion6.6
FetalThyroid8.7
Fetalbrain88.15
Fetalliver10.3
Fetallung7.25
GlobusPallidus67.5
Heart17.35
Hypothalamus55.5
Kidney7.1
Leukemia_chronicMyelogenousK-5628.05
Leukemia_promyelocytic-HL-607.6
Leukemialymphoblastic(MOLT-4)7.3
Liver11.5
Lung11.15
Lymphnode7.85
Lymphoma_burkitts(Daudi)11.4
Lymphoma_burkitts(Raji)12.25
MedullaOblongata162.15
OccipitalLobe107.6
OlfactoryBulb6.55
Ovary5.7
Pancreas8
PancreaticIslet22.55
ParietalLobe89.55
Pituitary38.85
Placenta9.75
Pons118.1
PrefrontalCortex394.8
Prostate10.8
Salivarygland7.05
SkeletalMuscle9.4
Skin6.35
SmoothMuscle10.25
Spinalcord24.15
SubthalamicNucleus131.2
SuperiorCervicalGanglion9.85
TemporalLobe184.4
Testis7.8
TestisGermCell7.7
TestisIntersitial7.5
TestisLeydigCell8.8
TestisSeminiferousTubule7.75
Thalamus196
Thymus7.25
Thyroid11.4
Tongue8.2
Tonsil8.65
Trachea7.55
TrigeminalGanglion8.5
Uterus7.45
UterusCorpus7.8
WholeBlood10
Wholebrain490.4
colon9
pineal_day236.94
pineal_night192.02
retina104.825
small_intestine8.95
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_15047_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala5.7 ± 0.61
Basal Forebrain5.65 ± 0.25
Basal Part of Pons6.5 ± 0.53
Cerebellar Cortex6.13 ± 0.25
Cerebellar Nuclei5.63 ± 0.97
Claustrum5.82 ± 0.58
Epithalamus5.01 ± 0.41
Frontal Lobe5.99 ± 0.49
Globus Pallidus4.58 ± 0.59
Hypothalamus5.25 ± 0.6
Insula6.02 ± 0.42
Limbic Lobe6.18 ± 0.53
Mesencephalon5.66 ± 0.55
Myelencephalon5.81 ± 0.59
Occipital Lobe6.11 ± 0.46
Parietal Lobe6.1 ± 0.51
Pontine Tegmentum5.8 ± 0.52
Striatum5.23 ± 0.49
Subthalamus5.61 ± 0.41
Temporal Lobe6 ± 0.41
Thalamus5.89 ± 0.47
White Matter4.2 ± 0.76
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Scamp5CBCerebellum61.45
100
Scamp5CTXCerebral cortex100
100
Scamp5HIPHippocampal region100
100
Scamp5HPFHippocampal formation100
100
Scamp5HYHypothalamus100
100
Scamp5LSXLateral septal complex100
100
Scamp5MBMidbrain100
100
Scamp5MYMedulla100
100
Scamp5OLFOlfactory bulb100
100
Scamp5PPons100
100
Scamp5PALPallidum100
100
Scamp5RHPRetrohippocampal region100
100
Scamp5sAMYStriatum-like amygdalar nuclei100
100
Scamp5STRStriatum100
100
Scamp5STRdStriatum dorsal region100
100
Scamp5STRvStriatum ventral region100
100
Scamp5THThalamus100
100
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


Copyright © 2017, Center for Bioinformatics , Peking University | All Rights Reserved