Annotation Detail for EFNA5
Basic Information Top
| Gene Symbol: | EFNA5 ( AF1,EFL5,EPLG7,GLC1M,LERK7,RAGS ) |
|---|---|
| Gene Full Name: | ephrin-A5 |
| Band: | 5q21.3 |
| Quick Links | Entrez ID:1946; OMIM: 601535; Uniprot ID:EFNA5_HUMAN; ENSEMBL ID: ENSG00000184349; HGNC ID: 3225 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.288741
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 3 / 62319 | 48 |  |
| fetus | 27 / 564012 | 47 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 68 / 1939121 | 35 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 1 / 12794 | 78 |  |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 1 / 94178 | 10 |  |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 5 / 82823 | 60 | |
| colorectal tumor | 2 / 114246 | 17 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 5 / 263845 | 18 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 2 / 136302 | 14 | |
| kidney tumor | 2 / 68959 | 29 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 2 / 96359 | 20 | |
| lung tumor | 1 / 103127 | 9 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 4 / 97250 | 41 | |
| normal | 71 / 3360307 | 21 | |
| ovarian tumor | 7 / 76682 | 91 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 3 / 125680 | 23 | |
| prostate cancer | 4 / 102680 | 38 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 3 / 124949 | 24 | |
| soft tissue/muscle tissue tumor | 5 / 125191 | 39 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 9 / 71655 | 125 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 10 / 1100989 | 9 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 1 / 149255 | 6 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 7 / 215722 | 32 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 4 / 211054 | 18 | |
| heart | 1 / 89626 | 11 | |
| intestine | 4 / 234472 | 17 | |
| kidney | 12 / 211777 | 56 | |
| larynx | 1 / 24145 | 41 | |
| liver | 2 / 207743 | 9 | |
| lung | 14 / 336974 | 41 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 12 / 153271 | 78 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 9 / 102051 | 88 | |
| pancreas | 8 / 214812 | 37 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 2 / 16585 | 120 | |
| placenta | 0 / 280825 | 0 | |
| prostate | 4 / 189345 | 21 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 6 / 210574 | 28 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 0 / 330442 | 0 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 1 / 52413 | 19 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 0 / 232878 | 0 | |
| vascular | 0 / 51780 | 0 |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 207301_at
| Cell line | Expression level | Expression bar |
|---|---|---|
| ||
| 721_B_lymphoblasts | 5.25 | |
| Adipocyte | 4.25 | |
| AdrenalCortex | 4.65 | |
| Adrenalgland | 3.7 | |
| Amygdala | 4.45 | |
| Appendix | 5.95 | |
| AtrioventricularNode | 4.45 | |
| BDCA4+_DentriticCells | 4.6 | |
| Bonemarrow | 4.4 | |
| BronchialEpithelialCells | 4.15 | |
| CD105+_Endothelial | 4.35 | |
| CD14+_Monocytes | 4.45 | |
| CD19+_BCells(neg._sel.) | 4.55 | |
| CD33+_Myeloid | 5.55 | |
| CD34+ | 5.35 | |
| CD4+_Tcells | 4.7 | |
| CD56+_NKCells | 5.1 | |
| CD71+_EarlyErythroid | 4.2 | |
| CD8+_Tcells | 4.1 | |
| CardiacMyocytes | 5.45 | |
| Caudatenucleus | 3.9 | |
| Cerebellum | 3.45 | |
| CerebellumPeduncles | 4.85 | |
| CiliaryGanglion | 4.3 | |
| CingulateCortex | 4.55 | |
| Colorectaladenocarcinoma | 4.3 | |
| DorsalRootGanglion | 4.1 | |
| FetalThyroid | 4.4 | |
| Fetalbrain | 4.3 | |
| Fetalliver | 3.75 | |
| Fetallung | 3.55 | |
| GlobusPallidus | 3.8 | |
| Heart | 5.6 | |
| Hypothalamus | 4.6 | |
| Kidney | 3.5 | |
| Leukemia_chronicMyelogenousK-562 | 3.9 | |
| Leukemia_promyelocytic-HL-60 | 3.8 | |
| Leukemialymphoblastic(MOLT-4) | 3.35 | |
| Liver | 5.65 | |
| Lung | 4.65 | |
| Lymphnode | 3.65 | |
| Lymphoma_burkitts(Daudi) | 5.55 | |
| Lymphoma_burkitts(Raji) | 6.05 | |
| MedullaOblongata | 3.9 | |
| OccipitalLobe | 3.85 | |
| OlfactoryBulb | 3.4 | |
| Ovary | 2.9 | |
| Pancreas | 3.45 | |
| PancreaticIslet | 4.6 | |
| ParietalLobe | 4.55 | |
| Pituitary | 5.1 | |
| Placenta | 4.2 | |
| Pons | 4.15 | |
| PrefrontalCortex | 5.25 | |
| Prostate | 5 | |
| Salivarygland | 4.3 | |
| SkeletalMuscle | 5.65 | |
| Skin | 3.85 | |
| SmoothMuscle | 4.8 | |
| Spinalcord | 4.6 | |
| SubthalamicNucleus | 4.25 | |
| SuperiorCervicalGanglion | 5.4 | |
| TemporalLobe | 4.05 | |
| Testis | 3.65 | |
| TestisGermCell | 3.65 | |
| TestisIntersitial | 5.4 | |
| TestisLeydigCell | 4.55 | |
| TestisSeminiferousTubule | 4 | |
| Thalamus | 4.4 | |
| Thymus | 3.35 | |
| Thyroid | 5.3 | |
| Tongue | 4.7 | |
| Tonsil | 4.2 | |
| Trachea | 3.6 | |
| TrigeminalGanglion | 7.7 | |
| Uterus | 3.5 | |
| UterusCorpus | 7.5 | |
| WholeBlood | 4.65 | |
| Wholebrain | 3.6 | |
| colon | 4.3 | |
| pineal_day | 5.32 | |
| pineal_night | 5.24 | |
| retina | 5.375 | |
| small_intestine | 4.1 | |
- Probe name: A_32_P171200
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 2.65 ± 1.18 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 1.99 ± 0.24 | |
| Basal Part of Pons | 2.17 ± 0.88 | |
| Cerebellar Cortex | 1.96 ± 0.94 | |
| Cerebellar Nuclei | 2.44 ± 0.65 | |
| Claustrum | 3.17 ± 0.83 | |
| Epithalamus | 1.67 ± 0.93 | |
| Frontal Lobe | 2.29 ± 0.92 | |
| Globus Pallidus | 2.32 ± 0.63 | |
| Hypothalamus | 2.38 ± 0.59 | |
| Insula | 2.24 ± 0.85 | |
| Limbic Lobe | 2.07 ± 0.89 | |
| Mesencephalon | 2.25 ± 0.95 | |
| Myelencephalon | 2.18 ± 0.77 | |
| Occipital Lobe | 2.22 ± 0.63 | |
| Parietal Lobe | 2.38 ± 0.99 | |
| Pontine Tegmentum | 2.28 ± 0.89 | |
| Striatum | 1.93 ± 0.96 | |
| Subthalamus | 2.06 ± 0.87 | |
| Temporal Lobe | 1.94 ± 0.84 | |
| Thalamus | 2.13 ± 0.81 | |
| White Matter | 1.8 ± 0.2 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Efna5 | CB | Cerebellum | 22.59 | |
| 29.3 | | |||
| Efna5 | CTX | Cerebral cortex | 81.2 | |
| 69.98 | | |||
| Efna5 | HIP | Hippocampal region | 11.96 | |
| 8.85 | | |||
| Efna5 | HPF | Hippocampal formation | 20.84 | |
| 17.02 | | |||
| Efna5 | HY | Hypothalamus | 43.69 | |
| 34.61 | | |||
| Efna5 | LSX | Lateral septal complex | 34.28 | |
| 23.07 | | |||
| Efna5 | MB | Midbrain | 20.38 | |
| 16.91 | | |||
| Efna5 | MY | Medulla | 20.09 | |
| 20.2 | | |||
| Efna5 | OLF | Olfactory bulb | 36.53 | |
| 26.02 | | |||
| Efna5 | P | Pons | 19.24 | |
| 18.69 | | |||
| Efna5 | PAL | Pallidum | 20.58 | |
| 17.32 | | |||
| Efna5 | RHP | Retrohippocampal region | 34.92 | |
| 27.03 | | |||
| Efna5 | sAMY | Striatum-like amygdalar nuclei | 26.88 | |
| 16.39 | | |||
| Efna5 | STR | Striatum | 17.12 | |
| 11.3 | | |||
| Efna5 | STRd | Striatum dorsal region | 13.72 | |
| 9.58 | | |||
| Efna5 | STRv | Striatum ventral region | 16.6 | |
| 9.66 | | |||
| Efna5 | TH | Thalamus | 25.08 | |
| 18.38 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00043225 | 14 | 100 | 113 | WECNRPHSPNGPLK | Peptide Atlas |