Annotation Detail for ARID2
Basic Information Top
| Gene Symbol: | ARID2 ( BAF200,DKFZp686G052,DKFZp779P0222,FLJ30619,KIAA1557,p200 ) |
|---|---|
| Gene Full Name: | AT rich interactive domain 2 (ARID, RFX-like) |
| Band: | 12q12 |
| Quick Links | Entrez ID:196528; OMIM: 609539; Uniprot ID:ARID2_HUMAN; ENSEMBL ID: ENSG00000189079; HGNC ID: 18037 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.317304
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 4 / 70761 | 56 |  |
| blastocyst | 3 / 62319 | 48 |  |
| fetus | 31 / 564012 | 54 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 77 / 1939121 | 39 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 1 / 17475 | 57 | |
| breast (mammary gland) tumor | 7 / 94178 | 74 | |
| cervical tumor | 1 / 34366 | 29 | |
| chondrosarcoma | 4 / 82823 | 48 | |
| colorectal tumor | 13 / 114246 | 113 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 23 / 263845 | 87 | |
| glioma | 3 / 106883 | 28 | |
| head and neck tumor | 7 / 136302 | 51 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 2 / 95842 | 20 | |
| liver tumor | 2 / 96359 | 20 | |
| lung tumor | 1 / 103127 | 9 |  |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 1 / 97250 | 10 | |
| normal | 100 / 3360307 | 29 | |
| ovarian tumor | 3 / 76682 | 39 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 1 / 125680 | 7 | |
| prostate cancer | 5 / 102680 | 48 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 1 / 124949 | 8 | |
| soft tissue/muscle tissue tumor | 1 / 125191 | 7 | |
| uterine tumor | 3 / 90257 | 33 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 2 / 29757 | 67 | |
| blood | 0 / 123478 | 0 | |
| bone | 1 / 71655 | 13 | |
| bone marrow | 3 / 48801 | 61 | |
| brain | 24 / 1100989 | 21 | |
| cervix | 1 / 48171 | 20 | |
| connective tissue | 3 / 149255 | 20 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 12 / 215722 | 55 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 7 / 211054 | 33 | |
| heart | 2 / 89626 | 22 | |
| intestine | 16 / 234472 | 68 | |
| kidney | 6 / 211777 | 28 | |
| larynx | 2 / 24145 | 82 | |
| liver | 4 / 207743 | 19 | |
| lung | 5 / 336974 | 14 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 3 / 91610 | 32 | |
| mammary gland | 11 / 153271 | 71 | |
| mouth | 2 / 67052 | 29 | |
| muscle | 2 / 107715 | 18 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 3 / 102051 | 29 | |
| pancreas | 0 / 214812 | 0 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 1 / 41328 | 24 | |
| pituitary gland | 1 / 16585 | 60 | |
| placenta | 9 / 280825 | 32 | |
| prostate | 8 / 189345 | 42 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 2 / 210574 | 9 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 38 / 330442 | 114 | |
| thymus | 2 / 81131 | 24 | |
| thyroid | 3 / 47473 | 63 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 2 / 52413 | 38 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 4 / 232878 | 17 | |
| vascular | 1 / 51780 | 19 | |
Microarray in - Probe name: CUST_4885_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 5.05 ± 0.41 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 5.62 ± 0.33 | |
| Basal Part of Pons | 5.24 ± 0.33 | |
| Cerebellar Cortex | 5.79 ± 0.18 | |
| Cerebellar Nuclei | 5.55 ± 0.38 | |
| Claustrum | 5.27 ± 0.51 | |
| Epithalamus | 6.2 ± 0.39 | |
| Frontal Lobe | 5.23 ± 0.45 | |
| Globus Pallidus | 5.61 ± 0.66 | |
| Hypothalamus | 5.54 ± 0.61 | |
| Insula | 5.31 ± 0.36 | |
| Limbic Lobe | 5.15 ± 0.44 | |
| Mesencephalon | 5.41 ± 0.51 | |
| Myelencephalon | 5.3 ± 0.5 | |
| Occipital Lobe | 5.71 ± 0.43 | |
| Parietal Lobe | 5.32 ± 0.46 | |
| Pontine Tegmentum | 5.41 ± 0.42 | |
| Striatum | 5.29 ± 0.51 | |
| Subthalamus | 5.32 ± 0.36 | |
| Temporal Lobe | 5.14 ± 0.45 | |
| Thalamus | 5.4 ± 0.39 | |
| White Matter | 6.33 ± 0.36 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Arid2 | CB | Cerebellum | 1.86 | |
| 2.32 | | |||
| Arid2 | CTX | Cerebral cortex | 2.79 | |
| 2.1 | | |||
| Arid2 | HIP | Hippocampal region | 7.71 | |
| 7.01 | | |||
| Arid2 | HPF | Hippocampal formation | 7.27 | |
| 6.4 | | |||
| Arid2 | HY | Hypothalamus | 1.12 | |
| 0.83 | | |||
| Arid2 | LSX | Lateral septal complex | 0.27 | |
| 0.51 | | |||
| Arid2 | MB | Midbrain | 1.73 | |
| 1.74 | | |||
| Arid2 | MY | Medulla | 1.72 | |
| 2.2 | | |||
| Arid2 | OLF | Olfactory bulb | 4.53 | |
| 4.42 | | |||
| Arid2 | P | Pons | 4.04 | |
| 4.58 | | |||
| Arid2 | PAL | Pallidum | 1.78 | |
| 1.4 | | |||
| Arid2 | RHP | Retrohippocampal region | 6.72 | |
| 5.74 | | |||
| Arid2 | sAMY | Striatum-like amygdalar nuclei | 1.07 | |
| 0.64 | | |||
| Arid2 | STR | Striatum | 0.79 | |
| 0.67 | | |||
| Arid2 | STRd | Striatum dorsal region | 0.61 | |
| 0.58 | | |||
| Arid2 | STRv | Striatum ventral region | 1.17 | |
| 0.79 | | |||
| Arid2 | TH | Thalamus | 2.98 | |
| 2.21 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00064331 | 20 | 503 | 522 | AVVAQHVAPPPGIVEIDSEK | Peptide Atlas |