Annotation Detail for LDHD
Basic Information Top
| Gene Symbol: | LDHD ( DLD,MGC57726 ) |
|---|---|
| Gene Full Name: | lactate dehydrogenase D |
| Band: | 16q23.1 |
| Quick Links | Entrez ID:197257; OMIM: 607490; Uniprot ID:LDHD_HUMAN; ENSEMBL ID: ENSG00000166816; HGNC ID: 19708 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.380929
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 3 / 564012 | 5 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 37 / 1939121 | 19 |  |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 1 / 82823 | 12 | |
| colorectal tumor | 1 / 114246 | 8 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 5 / 119369 | 41 | |
| germ cell tumor | 0 / 263845 | 0 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 1 / 103127 | 9 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 2 / 97250 | 20 | |
| normal | 38 / 3360307 | 11 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 1 / 104616 | 9 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 1 / 102680 | 9 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 1 / 90257 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 5 / 40015 | 124 |  |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 11 / 1100989 | 9 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 1 / 149255 | 6 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 0 / 215722 | 0 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 8 / 211054 | 37 | |
| heart | 1 / 89626 | 11 | |
| intestine | 3 / 234472 | 12 | |
| kidney | 1 / 211777 | 4 | |
| larynx | 0 / 24145 | 0 | |
| liver | 0 / 207743 | 0 | |
| lung | 3 / 336974 | 8 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 0 / 153271 | 0 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 1 / 102051 | 9 | |
| pancreas | 1 / 214812 | 4 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 3 / 280825 | 10 | |
| prostate | 1 / 189345 | 5 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 0 / 210574 | 0 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 1 / 96619 | 10 | |
| testis | 1 / 330442 | 3 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 1 / 232878 | 4 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_8102_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 3.91 ± 0.62 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 4.35 ± 0.42 | |
| Basal Part of Pons | 4.73 ± 0.49 | |
| Cerebellar Cortex | 3.68 ± 0.52 | |
| Cerebellar Nuclei | 4.21 ± 0.54 | |
| Claustrum | 3.67 ± 1.13 | |
| Epithalamus | 4.27 ± 0.62 | |
| Frontal Lobe | 4.4 ± 0.59 | |
| Globus Pallidus | 4.52 ± 0.69 | |
| Hypothalamus | 4.54 ± 0.35 | |
| Insula | 4.45 ± 0.32 | |
| Limbic Lobe | 3.89 ± 0.66 | |
| Mesencephalon | 4.32 ± 0.67 | |
| Myelencephalon | 4.18 ± 0.71 | |
| Occipital Lobe | 3.83 ± 0.57 | |
| Parietal Lobe | 4.14 ± 0.6 | |
| Pontine Tegmentum | 4.09 ± 0.65 | |
| Striatum | 3.92 ± 0.8 | |
| Subthalamus | 5.05 ± 0.52 | |
| Temporal Lobe | 4.28 ± 0.58 | |
| Thalamus | 4.49 ± 0.55 | |
| White Matter | 3.71 ± 0.43 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Ldhd | CB | Cerebellum | 10.94 | |
| 11.88 | | |||
| Ldhd | CTX | Cerebral cortex | 5.74 | |
| 4.03 | | |||
| Ldhd | HIP | Hippocampal region | 4.93 | |
| 4.42 | | |||
| Ldhd | HPF | Hippocampal formation | 4.55 | |
| 3.74 | | |||
| Ldhd | HY | Hypothalamus | 2.05 | |
| 1.41 | | |||
| Ldhd | LSX | Lateral septal complex | 0.71 | |
| 0.65 | | |||
| Ldhd | MB | Midbrain | 4.06 | |
| 3.66 | | |||
| Ldhd | MY | Medulla | 10.87 | |
| 10.62 | | |||
| Ldhd | OLF | Olfactory bulb | 7.94 | |
| 6.87 | | |||
| Ldhd | P | Pons | 7.69 | |
| 6.73 | | |||
| Ldhd | PAL | Pallidum | 5.85 | |
| 4.73 | | |||
| Ldhd | RHP | Retrohippocampal region | 4.29 | |
| 3.07 | | |||
| Ldhd | sAMY | Striatum-like amygdalar nuclei | 5.77 | |
| 3.9 | | |||
| Ldhd | STR | Striatum | 2.08 | |
| 1.44 | | |||
| Ldhd | STRd | Striatum dorsal region | 1.34 | |
| 0.98 | | |||
| Ldhd | STRv | Striatum ventral region | 3.15 | |
| 1.94 | | |||
| Ldhd | TH | Thalamus | 5.72 | |
| 3.92 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| LDHD_HUMAN_232 | 29 | 232 | 260 | RKSAAGYNLTGLFVGSEGTLGLITATTLR | PRIDE |
| PAp00003214 | 12 | 386 | 397 | GYSTDVCVPISR | Peptide Atlas |