Annotation Detail for WDR90
Basic Information Top
| Gene Symbol: | WDR90 ( C16orf15,C16orf16,C16orf17,C16orf18,C16orf19,FLJ36483,FLJ44660,KIAA1924 ) |
|---|---|
| Gene Full Name: | WD repeat domain 90 |
| Band: | 16p13.3 |
| Quick Links | Entrez ID:197335; OMIM: NA; Uniprot ID:WDR90_HUMAN; ENSEMBL ID: ENSG00000161996; HGNC ID: 26960 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.511903
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 2 / 70761 | 28 |  |
| blastocyst | 7 / 62319 | 112 |  |
| fetus | 16 / 564012 | 28 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 2 / 55556 | 35 | |
| adult | 45 / 1939121 | 23 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 1 / 94178 | 10 |  |
| cervical tumor | 1 / 34366 | 29 | |
| chondrosarcoma | 3 / 82823 | 36 | |
| colorectal tumor | 1 / 114246 | 8 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 5 / 119369 | 41 | |
| germ cell tumor | 0 / 263845 | 0 | |
| glioma | 8 / 106883 | 74 | |
| head and neck tumor | 1 / 136302 | 7 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 3 / 103127 | 29 | |
| lymphoma | 1 / 71755 | 13 | |
| non-neoplasia | 1 / 97250 | 10 | |
| normal | 96 / 3360307 | 28 | |
| ovarian tumor | 2 / 76682 | 26 | |
| pancreatic tumor | 2 / 104616 | 19 | |
| primitive neuroectodermal tumor of the CNS | 5 / 125680 | 39 | |
| prostate cancer | 1 / 102680 | 9 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 6 / 90257 | 66 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 3 / 40015 | 74 | |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 4 / 71655 | 55 | |
| bone marrow | 2 / 48801 | 40 | |
| brain | 32 / 1100989 | 29 | |
| cervix | 1 / 48171 | 20 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 9 / 215722 | 41 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 6 / 211054 | 28 | |
| heart | 1 / 89626 | 11 | |
| intestine | 8 / 234472 | 34 | |
| kidney | 4 / 211777 | 18 | |
| larynx | 1 / 24145 | 41 | |
| liver | 1 / 207743 | 4 | |
| lung | 10 / 336974 | 29 | |
| lymph | 1 / 44270 | 22 | |
| lymph node | 10 / 91610 | 109 | |
| mammary gland | 2 / 153271 | 13 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 3 / 107715 | 27 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 4 / 102051 | 39 | |
| pancreas | 3 / 214812 | 13 | |
| parathyroid | 1 / 20539 | 48 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 1 / 16585 | 60 | |
| placenta | 2 / 280825 | 7 | |
| prostate | 2 / 189345 | 10 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 0 / 210574 | 0 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 2 / 96619 | 20 | |
| testis | 14 / 330442 | 42 | |
| thymus | 6 / 81131 | 73 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 1 / 52413 | 19 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 7 / 232878 | 30 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: A_23_P408215
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 2.74 ± 0.85 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 2.49 ± 0.46 | |
| Basal Part of Pons | 2.72 ± 0.52 | |
| Cerebellar Cortex | 2.84 ± 0.65 | |
| Cerebellar Nuclei | 2.7 ± 0.46 | |
| Claustrum | 3.5 ± 0.73 | |
| Epithalamus | 2.21 ± 0.64 | |
| Frontal Lobe | 2.43 ± 0.76 | |
| Globus Pallidus | 2.84 ± 0.68 | |
| Hypothalamus | 2.7 ± 1.01 | |
| Insula | 2.73 ± 0.69 | |
| Limbic Lobe | 2.64 ± 0.75 | |
| Mesencephalon | 2.54 ± 0.77 | |
| Myelencephalon | 2.61 ± 0.74 | |
| Occipital Lobe | 2.45 ± 0.81 | |
| Parietal Lobe | 2.58 ± 0.76 | |
| Pontine Tegmentum | 2.52 ± 0.68 | |
| Striatum | 2.34 ± 0.72 | |
| Subthalamus | 2.85 ± 0.62 | |
| Temporal Lobe | 2.54 ± 0.73 | |
| Thalamus | 2.59 ± 0.73 | |
| White Matter | 2.99 ± 0.71 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| 3230401M21Rik | CB | Cerebellum | 14.22 | |
| 13.62 | | |||
| 3230401M21Rik | CTX | Cerebral cortex | 43.6 | |
| 25.51 | | |||
| 3230401M21Rik | HIP | Hippocampal region | 28 | |
| 26.85 | | |||
| 3230401M21Rik | HPF | Hippocampal formation | 30.59 | |
| 24.69 | | |||
| 3230401M21Rik | HY | Hypothalamus | 2.53 | |
| 1.7 | | |||
| 3230401M21Rik | LSX | Lateral septal complex | 5.82 | |
| 4.77 | | |||
| 3230401M21Rik | MB | Midbrain | 4.9 | |
| 3.79 | | |||
| 3230401M21Rik | MY | Medulla | 6.57 | |
| 5.7 | | |||
| 3230401M21Rik | OLF | Olfactory bulb | 45.8 | |
| 30.47 | | |||
| 3230401M21Rik | P | Pons | 7.34 | |
| 6.46 | | |||
| 3230401M21Rik | PAL | Pallidum | 3.12 | |
| 2.23 | | |||
| 3230401M21Rik | RHP | Retrohippocampal region | 34.01 | |
| 22.04 | | |||
| 3230401M21Rik | sAMY | Striatum-like amygdalar nuclei | 11.23 | |
| 7.16 | | |||
| 3230401M21Rik | STR | Striatum | 8.96 | |
| 6.02 | | |||
| 3230401M21Rik | STRd | Striatum dorsal region | 8.61 | |
| 5.99 | | |||
| 3230401M21Rik | STRv | Striatum ventral region | 9.07 | |
| 5.38 | | |||
| 3230401M21Rik | TH | Thalamus | 11.56 | |
| 8.27 | |