Annotation Detail for ZNF48
Basic Information Top
| Gene Symbol: | ZNF48 ( DKFZp762K013,FLJ31751,MGC43952,ZNF553 ) |
|---|---|
| Gene Full Name: | zinc finger protein 48 |
| Band: | 16p11.2 |
| Quick Links | Entrez ID:197407; OMIM: NA; Uniprot ID:ZNF48_HUMAN; ENSEMBL ID: ENSG00000180035; HGNC ID: 13114 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.513501
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 2 / 70761 | 28 |  |
| blastocyst | 2 / 62319 | 32 | |
| fetus | 13 / 564012 | 23 | |
| neonate | 0 / 31097 | 0 | |
| infant | 2 / 23620 | 84 |  |
| juvenile | 1 / 55556 | 17 | |
| adult | 20 / 1939121 | 10 |  |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 1 / 12794 | 78 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 1 / 34366 | 29 | |
| chondrosarcoma | 1 / 82823 | 12 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 5 / 263845 | 18 | |
| glioma | 2 / 106883 | 18 | |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 2 / 95842 | 20 | |
| liver tumor | 1 / 96359 | 10 | |
| lung tumor | 1 / 103127 | 9 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 3 / 97250 | 30 | |
| normal | 44 / 3360307 | 13 | |
| ovarian tumor | 2 / 76682 | 26 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 5 / 125680 | 39 | |
| prostate cancer | 7 / 102680 | 68 | |
| retinoblastoma | 1 / 46356 | 21 | |
| skin tumor | 9 / 124949 | 72 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 1 / 90257 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 2 / 123478 | 16 | |
| bone | 1 / 71655 | 13 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 19 / 1100989 | 17 | |
| cervix | 1 / 48171 | 20 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 5 / 215722 | 23 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 2 / 211054 | 9 | |
| heart | 3 / 89626 | 33 | |
| intestine | 1 / 234472 | 4 | |
| kidney | 2 / 211777 | 9 | |
| larynx | 0 / 24145 | 0 | |
| liver | 3 / 207743 | 14 | |
| lung | 5 / 336974 | 14 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 0 / 153271 | 0 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 2 / 102051 | 19 | |
| pancreas | 1 / 214812 | 4 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 3 / 280825 | 10 | |
| prostate | 10 / 189345 | 52 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 9 / 210574 | 42 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 2 / 330442 | 6 | |
| thymus | 1 / 81131 | 12 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 2 / 232878 | 8 | |
| vascular | 1 / 51780 | 19 | |
Microarray in - Probe name: CUST_8500_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 5.53 ± 0.58 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 5.33 ± 0.35 | |
| Basal Part of Pons | 5.21 ± 0.5 | |
| Cerebellar Cortex | 4.87 ± 0.43 | |
| Cerebellar Nuclei | 5.2 ± 0.5 | |
| Claustrum | 5.85 ± 0.72 | |
| Epithalamus | 4.87 ± 0.34 | |
| Frontal Lobe | 5.1 ± 0.58 | |
| Globus Pallidus | 5.81 ± 0.23 | |
| Hypothalamus | 4.91 ± 0.76 | |
| Insula | 4.99 ± 0.46 | |
| Limbic Lobe | 5.39 ± 0.59 | |
| Mesencephalon | 5.26 ± 0.55 | |
| Myelencephalon | 5.3 ± 0.61 | |
| Occipital Lobe | 5.21 ± 0.6 | |
| Parietal Lobe | 5.16 ± 0.57 | |
| Pontine Tegmentum | 5.07 ± 0.54 | |
| Striatum | 5.32 ± 0.56 | |
| Subthalamus | 5.36 ± 0.3 | |
| Temporal Lobe | 5.13 ± 0.54 | |
| Thalamus | 5.16 ± 0.51 | |
| White Matter | 5.73 ± 0.33 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Zfp553 | CB | Cerebellum | 70.86 | |
| 100 | | |||
| Zfp553 | CTX | Cerebral cortex | 100 | |
| 100 | | |||
| Zfp553 | HIP | Hippocampal region | 71.9 | |
| 100 | | |||
| Zfp553 | HPF | Hippocampal formation | 83.18 | |
| 100 | | |||
| Zfp553 | HY | Hypothalamus | 51.2 | |
| 46.81 | | |||
| Zfp553 | LSX | Lateral septal complex | 61.94 | |
| 46.93 | | |||
| Zfp553 | MB | Midbrain | 64.01 | |
| 64.56 | | |||
| Zfp553 | MY | Medulla | 79.23 | |
| 100 | | |||
| Zfp553 | OLF | Olfactory bulb | 98.65 | |
| 100 | | |||
| Zfp553 | P | Pons | 69.53 | |
| 86.71 | | |||
| Zfp553 | PAL | Pallidum | 50.1 | |
| 48.1 | | |||
| Zfp553 | RHP | Retrohippocampal region | 100 | |
| 97.78 | | |||
| Zfp553 | sAMY | Striatum-like amygdalar nuclei | 100 | |
| 97.88 | | |||
| Zfp553 | STR | Striatum | 72 | |
| 60.33 | | |||
| Zfp553 | STRd | Striatum dorsal region | 70.57 | |
| 59.71 | | |||
| Zfp553 | STRv | Striatum ventral region | 69.3 | |
| 54.26 | | |||
| Zfp553 | TH | Thalamus | 76.18 | |
| 74.46 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00097186 | 15 | 324 | 338 | VHTGEKPYLCPECGK | Peptide Atlas |