AutismKB 2.0

Annotation Detail for ELF1


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Basic Information Top
Gene Symbol:ELF1 ( - )
Gene Full Name: E74-like factor 1 (ets domain transcription factor)
Band: 13q14.11
Quick LinksEntrez ID:1997; OMIM: 189973; Uniprot ID:ELF1_HUMAN; ENSEMBL ID: ENSG00000120690; HGNC ID: 3316
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body2 / 7076128
blastocyst1 / 6231916
fetus29 / 56401251
neonate4 / 31097128
infant0 / 236200 
juvenile2 / 5555635
adult107 / 193912155
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma1 / 1747557
breast (mammary gland) tumor3 / 9417831
cervical tumor1 / 3436629
chondrosarcoma7 / 8282384
colorectal tumor2 / 11424617
esophageal tumor0 / 172900 
gastrointestinal tumor2 / 11936916
germ cell tumor19 / 26384572
glioma3 / 10688328
head and neck tumor28 / 136302205
kidney tumor0 / 689590 
leukemia17 / 95842177
liver tumor1 / 9635910
lung tumor1 / 1031279
lymphoma9 / 71755125
non-neoplasia11 / 97250113
normal207 / 336030761
ovarian tumor4 / 7668252
pancreatic tumor6 / 10461657
primitive neuroectodermal tumor of the CNS1 / 1256807
prostate cancer3 / 10268029
retinoblastoma1 / 4635621
skin tumor2 / 12494916
soft tissue/muscle tissue tumor1 / 1251917
uterine tumor13 / 90257144
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland2 / 3319760
ascites1 / 4001524
bladder1 / 2975733
blood21 / 123478170
bone2 / 7165527
bone marrow8 / 48801163
brain36 / 110098932
cervix1 / 4817120
connective tissue13 / 14925587
ear0 / 162120 
embryonic tissue4 / 21572218
esophagus0 / 202090 
eye6 / 21105428
heart3 / 8962633
intestine13 / 23447255
kidney10 / 21177747
larynx0 / 241450 
liver11 / 20774352
lung21 / 33697462
lymph8 / 44270180
lymph node47 / 91610513
mammary gland9 / 15327158
mouth23 / 67052343
muscle3 / 10771527
nerve1 / 1576863
ovary4 / 10205139
pancreas10 / 21481246
parathyroid3 / 20539146
pharynx7 / 41328169
pituitary gland0 / 165850 
placenta21 / 28082574
prostate10 / 18934552
salivary gland0 / 201550 
skin5 / 21057423
spleen1 / 5395218
stomach0 / 966190 
testis10 / 33044230
thymus33 / 81131406
thyroid3 / 4747363
tonsil0 / 169990 
trachea42 / 52413801
umbilical cord0 / 136800 
uterus24 / 232878103
vascular2 / 5178038
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 212420_at
Cell line Expression level Expression bar
721_B_lymphoblasts111.1
Adipocyte7.4
AdrenalCortex7.3
Adrenalgland6.7
Amygdala6.65
Appendix6.95
AtrioventricularNode4.45
BDCA4+_DentriticCells186.5
Bonemarrow7.15
BronchialEpithelialCells12.55
CD105+_Endothelial53.95
CD14+_Monocytes151.75
CD19+_BCells(neg._sel.)250
CD33+_Myeloid262.4
CD34+193
CD4+_Tcells177.8
CD56+_NKCells214.35
CD71+_EarlyErythroid12.35
CD8+_Tcells167.7
CardiacMyocytes5.85
Caudatenucleus5.45
Cerebellum5.45
CerebellumPeduncles6.65
CiliaryGanglion3.35
CingulateCortex6.55
Colorectaladenocarcinoma6.7
DorsalRootGanglion4.5
FetalThyroid6.5
Fetalbrain5.15
Fetalliver5.75
Fetallung4.7
GlobusPallidus4.25
Heart10.1
Hypothalamus6.55
Kidney5.6
Leukemia_chronicMyelogenousK-5624.55
Leukemia_promyelocytic-HL-608.05
Leukemialymphoblastic(MOLT-4)8.55
Liver18.05
Lung13.2
Lymphnode5.45
Lymphoma_burkitts(Daudi)8.5
Lymphoma_burkitts(Raji)9.25
MedullaOblongata6
OccipitalLobe5.85
OlfactoryBulb5.1
Ovary4.35
Pancreas28.7
PancreaticIslet10.6
ParietalLobe6.15
Pituitary6.65
Placenta9.2
Pons6.25
PrefrontalCortex7.8
Prostate29.15
Salivarygland3.85
SkeletalMuscle9.55
Skin4.35
SmoothMuscle6.85
Spinalcord6.7
SubthalamicNucleus5.55
SuperiorCervicalGanglion7.6
TemporalLobe6.15
Testis6.7
TestisGermCell9.3
TestisIntersitial5.45
TestisLeydigCell4.9
TestisSeminiferousTubule5.45
Thalamus5.2
Thymus187.65
Thyroid8.4
Tongue11.15
Tonsil13.3
Trachea5.95
TrigeminalGanglion6.65
Uterus8.3
UterusCorpus6
WholeBlood57.7
Wholebrain5.25
colon43.7
pineal_day7.74
pineal_night7.5
retina7.65
small_intestine28.55
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_24_P78590
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala2.32 ± 1.02
Basal Forebrain1.86 ± 0.2
Basal Part of Pons1.57 ± 0.46
Cerebellar Cortex1.79 ± 0.76
Cerebellar Nuclei2.24 ± 0.83
Claustrum2.77 ± 0.85
Epithalamus1.63 ± 0.71
Frontal Lobe1.84 ± 0.75
Globus Pallidus2.58 ± 0.42
Hypothalamus1.86 ± 0.67
Insula1.65 ± 0.61
Limbic Lobe2.02 ± 0.74
Mesencephalon2.07 ± 0.7
Myelencephalon1.94 ± 0.69
Occipital Lobe1.92 ± 0.51
Parietal Lobe1.93 ± 0.8
Pontine Tegmentum2.04 ± 0.78
Striatum2.14 ± 0.6
Subthalamus1.99 ± 0.58
Temporal Lobe1.81 ± 0.69
Thalamus1.91 ± 0.67
White Matter2.63 ± 0.66
Mouse Brain ISH
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00078199 18 541 558 SSQLVAHPPGTVITSVIK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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