AutismKB 2.0

Annotation Detail for APOBEC3A


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Basic Information Top
Gene Symbol:APOBEC3A ( ARP3,PHRBN,bK150C2.1 )
Gene Full Name: apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3A
Band: 22q13.1
Quick LinksEntrez ID:200315; OMIM: 607109; Uniprot ID:ABC3A_HUMAN; ENSEMBL ID: ENSG00000128383; HGNC ID: 17343
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus9 / 56401215
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult6 / 19391213
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor2 / 9417821
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor1 / 1193698
germ cell tumor1 / 2638453
glioma0 / 1068830 
head and neck tumor0 / 1363020 
kidney tumor0 / 689590 
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal15 / 33603074
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS1 / 1256807
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor1 / 1249498
soft tissue/muscle tissue tumor2 / 12519115
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites1 / 4001524
bladder0 / 297570 
blood0 / 1234780 
bone1 / 7165513
bone marrow0 / 488010 
brain0 / 11009890 
cervix0 / 481710 
connective tissue0 / 1492550 
ear1 / 1621261
embryonic tissue0 / 2157220 
esophagus0 / 202090 
eye0 / 2110540 
heart0 / 896260 
intestine3 / 23447212
kidney0 / 2117770 
larynx0 / 241450 
liver1 / 2077434
lung0 / 3369740 
lymph0 / 442700 
lymph node0 / 916100 
mammary gland2 / 15327113
mouth0 / 670520 
muscle0 / 1077150 
nerve0 / 157680 
ovary0 / 1020510 
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta0 / 2808250 
prostate1 / 1893455
salivary gland0 / 201550 
skin1 / 2105744
spleen0 / 539520 
stomach0 / 966190 
testis0 / 3304420 
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus2 / 2328788
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 210873_x_at
Cell line Expression level Expression bar
721_B_lymphoblasts9.45
Adipocyte8.3
AdrenalCortex10.8
Adrenalgland7.6
Amygdala8.45
Appendix9.55
AtrioventricularNode8.1
BDCA4+_DentriticCells31.65
Bonemarrow22.05
BronchialEpithelialCells8.1
CD105+_Endothelial15.8
CD14+_Monocytes296.95
CD19+_BCells(neg._sel.)8.6
CD33+_Myeloid322.15
CD34+10.05
CD4+_Tcells8.55
CD56+_NKCells32.2
CD71+_EarlyErythroid18.9
CD8+_Tcells7.35
CardiacMyocytes15.45
Caudatenucleus7.6
Cerebellum7.1
CerebellumPeduncles10.45
CiliaryGanglion7.6
CingulateCortex8.8
Colorectaladenocarcinoma8.65
DorsalRootGanglion7.55
FetalThyroid8.45
Fetalbrain8.2
Fetalliver7.8
Fetallung6.45
GlobusPallidus6.8
Heart16.3
Hypothalamus8.7
Kidney7.75
Leukemia_chronicMyelogenousK-5627.65
Leukemia_promyelocytic-HL-607.45
Leukemialymphoblastic(MOLT-4)6.45
Liver13.95
Lung11.1
Lymphnode6.9
Lymphoma_burkitts(Daudi)11.4
Lymphoma_burkitts(Raji)14.1
MedullaOblongata7.6
OccipitalLobe7.45
OlfactoryBulb6.6
Ovary6.1
Pancreas7.25
PancreaticIslet9.15
ParietalLobe9.7
Pituitary9.85
Placenta8.25
Pons8.6
PrefrontalCortex9.95
Prostate9.7
Salivarygland7.3
SkeletalMuscle12.65
Skin7.85
SmoothMuscle9.45
Spinalcord9
SubthalamicNucleus8.25
SuperiorCervicalGanglion13.75
TemporalLobe8.15
Testis7.25
TestisGermCell6.6
TestisIntersitial7.3
TestisLeydigCell8.9
TestisSeminiferousTubule7.3
Thalamus8.9
Thymus6.45
Thyroid10.05
Tongue9.55
Tonsil12.4
Trachea7.2
TrigeminalGanglion10.15
Uterus6.65
UterusCorpus8.8
WholeBlood637.6
Wholebrain6.7
colon8.65
pineal_day10.34
pineal_night10.16
retina10.275
small_intestine8.1
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_32_P9543
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala2.13 ± 1.06
Basal Forebrain1.6 ± 0.21
Basal Part of Pons1.28 ± 0.37
Cerebellar Cortex1.56 ± 0.73
Cerebellar Nuclei1.98 ± 0.79
Claustrum2.41 ± 0.73
Epithalamus1.35 ± 0.81
Frontal Lobe1.48 ± 0.69
Globus Pallidus2.06 ± 0.37
Hypothalamus1.72 ± 0.71
Insula1.41 ± 0.46
Limbic Lobe1.68 ± 0.71
Mesencephalon1.87 ± 0.79
Myelencephalon1.69 ± 0.69
Occipital Lobe1.81 ± 0.77
Parietal Lobe1.59 ± 0.64
Pontine Tegmentum1.68 ± 0.64
Striatum2.07 ± 0.83
Subthalamus1.87 ± 0.65
Temporal Lobe1.59 ± 0.76
Thalamus1.63 ± 0.63
White Matter1.86 ± 0.14
Mouse Brain ISH
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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