AutismKB 2.0

Annotation Detail for APOBEC3F


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Basic Information Top
Gene Symbol:APOBEC3F ( ARP8,BK150C2.4.MRNA,KA6,MGC74891 )
Gene Full Name: apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3F
Band: 22q13.1
Quick LinksEntrez ID:200316; OMIM: 608993; Uniprot ID:ABC3F_HUMAN; ENSEMBL ID: ENSG00000128394; HGNC ID: 17356
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst3 / 6231948
fetus6 / 56401210
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult8 / 19391214
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor1 / 9417810
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor1 / 1142468
esophageal tumor0 / 172900 
gastrointestinal tumor1 / 1193698
germ cell tumor0 / 2638450 
glioma0 / 1068830 
head and neck tumor0 / 1363020 
kidney tumor0 / 689590 
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor1 / 1031279
lymphoma1 / 7175513
non-neoplasia1 / 9725010
normal32 / 33603079
ovarian tumor0 / 766820 
pancreatic tumor1 / 1046169
primitive neuroectodermal tumor of the CNS4 / 12568031
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor2 / 12494916
soft tissue/muscle tissue tumor2 / 12519115
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood3 / 12347824
bone0 / 716550 
bone marrow1 / 4880120
brain3 / 11009892
cervix0 / 481710 
connective tissue1 / 1492556
ear0 / 162120 
embryonic tissue3 / 21572213
esophagus0 / 202090 
eye2 / 2110549
heart3 / 8962633
intestine3 / 23447212
kidney0 / 2117770 
larynx0 / 241450 
liver0 / 2077430 
lung7 / 33697420
lymph1 / 4427022
lymph node4 / 9161043
mammary gland1 / 1532716
mouth0 / 670520 
muscle0 / 1077150 
nerve0 / 157680 
ovary0 / 1020510 
pancreas1 / 2148124
parathyroid1 / 2053948
pharynx1 / 4132824
pituitary gland0 / 165850 
placenta1 / 2808253
prostate2 / 18934510
salivary gland0 / 201550 
skin3 / 21057414
spleen1 / 5395218
stomach1 / 9661910
testis1 / 3304423
thymus2 / 8113124
thyroid0 / 474730 
tonsil1 / 1699958
trachea0 / 524130 
umbilical cord0 / 136800 
uterus3 / 23287812
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 214995_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts96.9
Adipocyte13.7
AdrenalCortex15.35
Adrenalgland10.05
Amygdala10.3
Appendix14.8
AtrioventricularNode8.35
BDCA4+_DentriticCells42.05
Bonemarrow11.95
BronchialEpithelialCells11.05
CD105+_Endothelial8.95
CD14+_Monocytes11.5
CD19+_BCells(neg._sel.)22
CD33+_Myeloid21.25
CD34+12.6
CD4+_Tcells47.85
CD56+_NKCells286.8
CD71+_EarlyErythroid9.5
CD8+_Tcells82.55
CardiacMyocytes24.4
Caudatenucleus8.95
Cerebellum8.6
CerebellumPeduncles12.3
CiliaryGanglion10.45
CingulateCortex10.55
Colorectaladenocarcinoma37.05
DorsalRootGanglion18.7
FetalThyroid9.85
Fetalbrain9.95
Fetalliver13.7
Fetallung7.95
GlobusPallidus8.15
Heart23.2
Hypothalamus10.6
Kidney9.85
Leukemia_chronicMyelogenousK-5629.95
Leukemia_promyelocytic-HL-6011.3
Leukemialymphoblastic(MOLT-4)8.35
Liver16.65
Lung11.25
Lymphnode11.35
Lymphoma_burkitts(Daudi)16.55
Lymphoma_burkitts(Raji)21.65
MedullaOblongata9.5
OccipitalLobe9.1
OlfactoryBulb7.9
Ovary7.7
Pancreas11.65
PancreaticIslet10.65
ParietalLobe11.45
Pituitary12.55
Placenta9.2
Pons17.6
PrefrontalCortex10.1
Prostate11.85
Salivarygland11.1
SkeletalMuscle17.1
Skin8.2
SmoothMuscle11.8
Spinalcord10.4
SubthalamicNucleus9
SuperiorCervicalGanglion19.15
TemporalLobe9.65
Testis14.95
TestisGermCell23.6
TestisIntersitial10.05
TestisLeydigCell12.85
TestisSeminiferousTubule9.2
Thalamus9.35
Thymus11.1
Thyroid11.9
Tongue11.95
Tonsil16.3
Trachea10.15
TrigeminalGanglion11.4
Uterus9.65
UterusCorpus14.85
WholeBlood20.25
Wholebrain8.05
colon10.7
pineal_day11.08
pineal_night10.62
retina12.5
small_intestine10.35
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_1417_PI416379584
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala3.47 ± 0.67
Basal Forebrain3.31 ± 0.4
Basal Part of Pons3.07 ± 0.64
Cerebellar Cortex2.97 ± 0.44
Cerebellar Nuclei3.65 ± 0.63
Claustrum3.26 ± 0.61
Epithalamus4.45 ± 0.52
Frontal Lobe3.24 ± 0.65
Globus Pallidus5.04 ± 0.29
Hypothalamus3.81 ± 0.89
Insula3.43 ± 0.57
Limbic Lobe3.27 ± 0.72
Mesencephalon3.69 ± 0.69
Myelencephalon3.48 ± 0.71
Occipital Lobe3.3 ± 0.75
Parietal Lobe3.19 ± 0.71
Pontine Tegmentum3.52 ± 0.6
Striatum4.05 ± 0.49
Subthalamus3.25 ± 0.35
Temporal Lobe3.43 ± 0.67
Thalamus3.49 ± 0.5
White Matter3.32 ± 0.32
Mouse Brain ISH
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00490520 12 294 305 HSNVNLTIFTAR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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