AutismKB 2.0

Annotation Detail for EMP3


View Evidences View Variants View Annotations
Basic Information Top
Gene Symbol:EMP3 ( YMP )
Gene Full Name: epithelial membrane protein 3
Band: 19q13.33
Quick LinksEntrez ID:2014; OMIM: 602335; Uniprot ID:EMP3_HUMAN; ENSEMBL ID: ENSG00000142227; HGNC ID: 3335
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body2 / 7076128
blastocyst0 / 623190 
fetus26 / 56401246
neonate3 / 3109796
infant3 / 23620127
juvenile1 / 5555617
adult89 / 193912145
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor4 / 9417842
cervical tumor1 / 3436629
chondrosarcoma12 / 82823144
colorectal tumor2 / 11424617
esophageal tumor0 / 172900 
gastrointestinal tumor5 / 11936941
germ cell tumor3 / 26384511
glioma9 / 10688384
head and neck tumor0 / 1363020 
kidney tumor3 / 6895943
leukemia7 / 9584273
liver tumor3 / 9635931
lung tumor9 / 10312787
lymphoma0 / 717550 
non-neoplasia2 / 9725020
normal119 / 336030735
ovarian tumor2 / 7668226
pancreatic tumor9 / 10461686
primitive neuroectodermal tumor of the CNS1 / 1256807
prostate cancer3 / 10268029
retinoblastoma0 / 463560 
skin tumor7 / 12494956
soft tissue/muscle tissue tumor3 / 12519123
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue2 / 13106152
adrenal gland0 / 331970 
ascites3 / 4001574
bladder0 / 297570 
blood6 / 12347848
bone20 / 71655279
bone marrow0 / 488010 
brain11 / 11009899
cervix1 / 4817120
connective tissue6 / 14925540
ear0 / 162120 
embryonic tissue2 / 2157229
esophagus0 / 202090 
eye12 / 21105456
heart10 / 89626111
intestine7 / 23447229
kidney8 / 21177737
larynx0 / 241450 
liver4 / 20774319
lung26 / 33697477
lymph0 / 442700 
lymph node2 / 9161021
mammary gland9 / 15327158
mouth0 / 670520 
muscle0 / 1077150 
nerve0 / 157680 
ovary2 / 10205119
pancreas11 / 21481251
parathyroid0 / 205390 
pharynx2 / 4132848
pituitary gland0 / 165850 
placenta8 / 28082528
prostate10 / 18934552
salivary gland0 / 201550 
skin26 / 210574123
spleen1 / 5395218
stomach3 / 9661931
testis5 / 33044215
thymus1 / 8113112
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord3 / 13680219
uterus3 / 23287812
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 203729_at
Cell line Expression level Expression bar
721_B_lymphoblasts192.9
Adipocyte132.1
AdrenalCortex6.45
Adrenalgland54.7
Amygdala8.65
Appendix33.05
AtrioventricularNode5.15
BDCA4+_DentriticCells622.2
Bonemarrow90.75
BronchialEpithelialCells119.4
CD105+_Endothelial65.8
CD14+_Monocytes818.5
CD19+_BCells(neg._sel.)482.6
CD33+_Myeloid818.1
CD34+260.7
CD4+_Tcells586.45
CD56+_NKCells700.35
CD71+_EarlyErythroid9.05
CD8+_Tcells483.3
CardiacMyocytes374.35
Caudatenucleus6.15
Cerebellum5.65
CerebellumPeduncles6.55
CiliaryGanglion6.6
CingulateCortex7.65
Colorectaladenocarcinoma290.25
DorsalRootGanglion4.7
FetalThyroid11.1
Fetalbrain6.45
Fetalliver13.5
Fetallung84.3
GlobusPallidus4.2
Heart102.6
Hypothalamus7.45
Kidney6.65
Leukemia_chronicMyelogenousK-562171.05
Leukemia_promyelocytic-HL-606.3
Leukemialymphoblastic(MOLT-4)25.2
Liver11.55
Lung603.7
Lymphnode97.6
Lymphoma_burkitts(Daudi)7.25
Lymphoma_burkitts(Raji)8.25
MedullaOblongata5.35
OccipitalLobe5.25
OlfactoryBulb22.3
Ovary16
Pancreas6.5
PancreaticIslet7.75
ParietalLobe6.15
Pituitary7.75
Placenta30.75
Pons8.85
PrefrontalCortex7.8
Prostate76.3
Salivarygland5.35
SkeletalMuscle5.35
Skin4.45
SmoothMuscle361.05
Spinalcord37.95
SubthalamicNucleus5.2
SuperiorCervicalGanglion7
TemporalLobe6.35
Testis10.6
TestisGermCell19.55
TestisIntersitial6.9
TestisLeydigCell7.25
TestisSeminiferousTubule7.85
Thalamus7.45
Thymus53.65
Thyroid79.5
Tongue8.2
Tonsil55.15
Trachea30.1
TrigeminalGanglion7.95
Uterus275.95
UterusCorpus82
WholeBlood783.25
Wholebrain8
colon66.55
pineal_day9.04
pineal_night8.22
retina65.95
small_intestine23.5
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_10569_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala4.8 ± 0.47
Basal Forebrain4.92 ± 0.41
Basal Part of Pons4.35 ± 0.35
Cerebellar Cortex4.85 ± 0.47
Cerebellar Nuclei5.2 ± 0.52
Claustrum4.44 ± 0.85
Epithalamus5.72 ± 0.58
Frontal Lobe4.58 ± 0.6
Globus Pallidus6.02 ± 0.47
Hypothalamus4.89 ± 0.61
Insula4.85 ± 0.45
Limbic Lobe4.74 ± 0.67
Mesencephalon4.96 ± 0.45
Myelencephalon4.87 ± 0.59
Occipital Lobe4.53 ± 0.63
Parietal Lobe4.63 ± 0.69
Pontine Tegmentum4.67 ± 0.61
Striatum5.1 ± 0.52
Subthalamus4.78 ± 0.21
Temporal Lobe4.62 ± 0.61
Thalamus4.7 ± 0.4
White Matter5.66 ± 0.66
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Emp3CBCerebellum0.42
0.79
Emp3CTXCerebral cortex0.27
0.54
Emp3HIPHippocampal region0.15
0.21
Emp3HPFHippocampal formation0.17
0.27
Emp3HYHypothalamus0.99
1.95
Emp3LSXLateral septal complex0.17
0.19
Emp3MBMidbrain0.65
1.24
Emp3MYMedulla0.38
0.97
Emp3OLFOlfactory bulb0.55
0.74
Emp3PPons3.66
6.71
Emp3PALPallidum0.18
1.75
Emp3RHPRetrohippocampal region0.26
0.51
Emp3sAMYStriatum-like amygdalar nuclei1.14
1.36
Emp3STRStriatum0.23
0.41
Emp3STRdStriatum dorsal region0.12
0.42
Emp3STRvStriatum ventral region0.09
0.11
Emp3THThalamus0.19
0.21
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


Copyright © 2017, Center for Bioinformatics , Peking University | All Rights Reserved