Annotation Detail for FAM116A
Basic Information Top
| Gene Symbol: | FAM116A ( FLJ34969 ) |
|---|---|
| Gene Full Name: | family with sequence similarity 116, member A |
| Band: | 3p14.3 |
| Quick Links | Entrez ID:201627; OMIM: NA; Uniprot ID:F116A_HUMAN; ENSEMBL ID: ENSG00000174839; HGNC ID: |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.91085
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 11 / 564012 | 19 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 1 / 23620 | 42 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 39 / 1939121 | 20 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 1 / 12794 | 78 |  |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 2 / 82823 | 24 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 3 / 119369 | 25 | |
| germ cell tumor | 13 / 263845 | 49 | |
| glioma | 3 / 106883 | 28 | |
| head and neck tumor | 4 / 136302 | 29 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 1 / 95842 | 10 |  |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 3 / 97250 | 30 | |
| normal | 41 / 3360307 | 12 | |
| ovarian tumor | 1 / 76682 | 13 | |
| pancreatic tumor | 1 / 104616 | 9 | |
| primitive neuroectodermal tumor of the CNS | 5 / 125680 | 39 | |
| prostate cancer | 5 / 102680 | 48 | |
| retinoblastoma | 2 / 46356 | 43 | |
| skin tumor | 4 / 124949 | 32 | |
| soft tissue/muscle tissue tumor | 3 / 125191 | 23 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 1 / 123478 | 8 | |
| bone | 2 / 71655 | 27 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 15 / 1100989 | 13 | |
| cervix | 1 / 48171 | 20 | |
| connective tissue | 2 / 149255 | 13 | |
| ear | 1 / 16212 | 61 | |
| embryonic tissue | 5 / 215722 | 23 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 3 / 211054 | 14 | |
| heart | 0 / 89626 | 0 | |
| intestine | 0 / 234472 | 0 | |
| kidney | 1 / 211777 | 4 | |
| larynx | 0 / 24145 | 0 | |
| liver | 0 / 207743 | 0 | |
| lung | 2 / 336974 | 5 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 4 / 91610 | 43 | |
| mammary gland | 4 / 153271 | 26 | |
| mouth | 4 / 67052 | 59 | |
| muscle | 1 / 107715 | 9 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 1 / 102051 | 9 | |
| pancreas | 4 / 214812 | 18 | |
| parathyroid | 2 / 20539 | 97 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 3 / 280825 | 10 | |
| prostate | 5 / 189345 | 26 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 4 / 210574 | 18 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 2 / 96619 | 20 | |
| testis | 10 / 330442 | 30 | |
| thymus | 3 / 81131 | 36 | |
| thyroid | 2 / 47473 | 42 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 7 / 232878 | 30 | |
| vascular | 0 / 51780 | 0 |
- Probe name: CUST_6852_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 6.55 ± 0.33 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 6.45 ± 0.23 | |
| Basal Part of Pons | 6.17 ± 0.29 | |
| Cerebellar Cortex | 6.61 ± 0.31 | |
| Cerebellar Nuclei | 6.56 ± 0.24 | |
| Claustrum | 6.5 ± 0.46 | |
| Epithalamus | 6.51 ± 0.26 | |
| Frontal Lobe | 6.15 ± 0.39 | |
| Globus Pallidus | 6.71 ± 0.24 | |
| Hypothalamus | 6.31 ± 0.4 | |
| Insula | 6.27 ± 0.28 | |
| Limbic Lobe | 6.33 ± 0.45 | |
| Mesencephalon | 6.49 ± 0.42 | |
| Myelencephalon | 6.4 ± 0.4 | |
| Occipital Lobe | 6.8 ± 0.4 | |
| Parietal Lobe | 6.4 ± 0.39 | |
| Pontine Tegmentum | 6.38 ± 0.46 | |
| Striatum | 6.41 ± 0.56 | |
| Subthalamus | 6.46 ± 0.15 | |
| Temporal Lobe | 6.27 ± 0.36 | |
| Thalamus | 6.31 ± 0.27 | |
| White Matter | 7.43 ± 0.23 | |
Mouse Brain ISH 
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00166412 | 13 | 15 | 27 | RPLDEAVAGAEGR | Peptide Atlas |