Annotation Detail for CCDC125
Basic Information Top
| Gene Symbol: | CCDC125 ( KENAE ) |
|---|---|
| Gene Full Name: | coiled-coil domain containing 125 |
| Band: | 5q13.2 |
| Quick Links | Entrez ID:202243; OMIM: NA; Uniprot ID:CC125_HUMAN; ENSEMBL ID: ENSG00000183323; HGNC ID: 28924 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.654850
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 2 / 564012 | 3 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 1 / 23620 | 42 |  |
| juvenile | 2 / 55556 | 35 | |
| adult | 24 / 1939121 | 12 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 2 / 94178 | 21 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 3 / 119369 | 25 | |
| germ cell tumor | 1 / 263845 | 3 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 1 / 136302 | 7 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 4 / 95842 | 41 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 1 / 103127 | 9 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 2 / 97250 | 20 | |
| normal | 22 / 3360307 | 6 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 1 / 102680 | 9 | |
| retinoblastoma | 2 / 46356 | 43 | |
| skin tumor | 1 / 124949 | 8 | |
| soft tissue/muscle tissue tumor | 5 / 125191 | 39 | |
| uterine tumor | 1 / 90257 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 1 / 13106 | 76 |  |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 2 / 40015 | 49 | |
| bladder | 0 / 29757 | 0 | |
| blood | 4 / 123478 | 32 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 4 / 1100989 | 3 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 1 / 149255 | 6 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 0 / 215722 | 0 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 3 / 211054 | 14 | |
| heart | 0 / 89626 | 0 | |
| intestine | 0 / 234472 | 0 | |
| kidney | 1 / 211777 | 4 | |
| larynx | 0 / 24145 | 0 | |
| liver | 5 / 207743 | 24 | |
| lung | 1 / 336974 | 2 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 4 / 91610 | 43 | |
| mammary gland | 3 / 153271 | 19 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 0 / 214812 | 0 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 1 / 41328 | 24 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 2 / 280825 | 7 | |
| prostate | 1 / 189345 | 5 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 1 / 210574 | 4 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 1 / 96619 | 10 | |
| testis | 1 / 330442 | 3 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 2 / 52413 | 38 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 2 / 232878 | 8 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_355_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 7.72 ± 0.27 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 7.9 ± 0.38 | |
| Basal Part of Pons | 7.67 ± 0.23 | |
| Cerebellar Cortex | 8.01 ± 0.13 | |
| Cerebellar Nuclei | 7.75 ± 0.27 | |
| Claustrum | 8.11 ± 0.28 | |
| Epithalamus | 8.38 ± 0.16 | |
| Frontal Lobe | 7.74 ± 0.28 | |
| Globus Pallidus | 8.39 ± 0.18 | |
| Hypothalamus | 7.92 ± 0.2 | |
| Insula | 7.69 ± 0.23 | |
| Limbic Lobe | 7.73 ± 0.34 | |
| Mesencephalon | 8.02 ± 0.23 | |
| Myelencephalon | 7.87 ± 0.31 | |
| Occipital Lobe | 8.08 ± 0.32 | |
| Parietal Lobe | 7.87 ± 0.26 | |
| Pontine Tegmentum | 7.8 ± 0.25 | |
| Striatum | 7.64 ± 0.36 | |
| Subthalamus | 7.85 ± 0.13 | |
| Temporal Lobe | 7.77 ± 0.27 | |
| Thalamus | 7.99 ± 0.2 | |
| White Matter | 8.28 ± 0.28 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| 5830436D01Rik | CB | Cerebellum | 2.34 | |
| 2.74 | | |||
| 5830436D01Rik | CTX | Cerebral cortex | 1.31 | |
| 1.56 | | |||
| 5830436D01Rik | HIP | Hippocampal region | 1.5 | |
| 1.43 | | |||
| 5830436D01Rik | HPF | Hippocampal formation | 1.16 | |
| 1.07 | | |||
| 5830436D01Rik | HY | Hypothalamus | 0.3 | |
| 0.38 | | |||
| 5830436D01Rik | LSX | Lateral septal complex | 0.6 | |
| 0.52 | | |||
| 5830436D01Rik | MB | Midbrain | 0.48 | |
| 0.56 | | |||
| 5830436D01Rik | MY | Medulla | 0.61 | |
| 0.77 | | |||
| 5830436D01Rik | OLF | Olfactory bulb | 1.07 | |
| 0.96 | | |||
| 5830436D01Rik | P | Pons | 0.56 | |
| 0.67 | | |||
| 5830436D01Rik | PAL | Pallidum | 0.45 | |
| 0.38 | | |||
| 5830436D01Rik | RHP | Retrohippocampal region | 0.57 | |
| 0.5 | | |||
| 5830436D01Rik | sAMY | Striatum-like amygdalar nuclei | 0.56 | |
| 0.46 | | |||
| 5830436D01Rik | STR | Striatum | 0.56 | |
| 0.58 | | |||
| 5830436D01Rik | STRd | Striatum dorsal region | 0.52 | |
| 0.56 | | |||
| 5830436D01Rik | STRv | Striatum ventral region | 0.69 | |
| 0.69 | | |||
| 5830436D01Rik | TH | Thalamus | 0.85 | |
| 1.19 | |