AutismKB 2.0

Annotation Detail for F13A1


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Basic Information Top
Gene Symbol:F13A1 ( F13A )
Gene Full Name: coagulation factor XIII, A1 polypeptide
Band: 6p25.1
Quick LinksEntrez ID:2162; OMIM: 134570; Uniprot ID:F13A_HUMAN; ENSEMBL ID: ENSG00000124491; HGNC ID: 3531
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus71 / 564012125
neonate3 / 3109796
infant0 / 236200 
juvenile2 / 5555635
adult154 / 193912179
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma1 / 1747557
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma6 / 8282372
colorectal tumor3 / 11424626
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor0 / 2638450 
glioma9 / 10688384
head and neck tumor4 / 13630229
kidney tumor2 / 6895929
leukemia1 / 9584210
liver tumor0 / 963590 
lung tumor1 / 1031279
lymphoma0 / 717550 
non-neoplasia7 / 9725071
normal219 / 336030765
ovarian tumor0 / 766820 
pancreatic tumor5 / 10461647
primitive neuroectodermal tumor of the CNS2 / 12568015
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor1 / 1251917
uterine tumor2 / 9025722
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue3 / 13106228
adrenal gland1 / 3319730
ascites0 / 400150 
bladder0 / 297570 
blood3 / 12347824
bone9 / 71655125
bone marrow2 / 4880140
brain22 / 110098919
cervix0 / 481710 
connective tissue8 / 14925553
ear0 / 162120 
embryonic tissue1 / 2157224
esophagus0 / 202090 
eye13 / 21105461
heart6 / 8962666
intestine4 / 23447217
kidney2 / 2117779
larynx1 / 2414541
liver0 / 2077430 
lung6 / 33697417
lymph0 / 442700 
lymph node1 / 9161010
mammary gland1 / 1532716
mouth2 / 6705229
muscle1 / 1077159
nerve0 / 157680 
ovary0 / 1020510 
pancreas8 / 21481237
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta111 / 280825395
prostate1 / 1893455
salivary gland0 / 201550 
skin0 / 2105740 
spleen0 / 539520 
stomach0 / 966190 
testis4 / 33044212
thymus5 / 8113161
thyroid1 / 4747321
tonsil0 / 169990 
trachea30 / 52413572
umbilical cord0 / 136800 
uterus10 / 23287842
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 203305_at
Cell line Expression level Expression bar
721_B_lymphoblasts5.1
Adipocyte4.9
AdrenalCortex5.5
Adrenalgland13.15
Amygdala5.7
Appendix14.1
AtrioventricularNode8.1
BDCA4+_DentriticCells11.85
Bonemarrow11.9
BronchialEpithelialCells4.25
CD105+_Endothelial4.7
CD14+_Monocytes149.7
CD19+_BCells(neg._sel.)7.35
CD33+_Myeloid51.85
CD34+21.95
CD4+_Tcells4.45
CD56+_NKCells4.95
CD71+_EarlyErythroid3.9
CD8+_Tcells4.05
CardiacMyocytes6.25
Caudatenucleus4.1
Cerebellum4.35
CerebellumPeduncles4.9
CiliaryGanglion6.8
CingulateCortex5.9
Colorectaladenocarcinoma5.5
DorsalRootGanglion7.1
FetalThyroid13.75
Fetalbrain5.55
Fetalliver8.55
Fetallung42.85
GlobusPallidus3.4
Heart6.95
Hypothalamus5.45
Kidney8.55
Leukemia_chronicMyelogenousK-5624
Leukemia_promyelocytic-HL-603.8
Leukemialymphoblastic(MOLT-4)3.8
Liver7.2
Lung19.4
Lymphnode19.7
Lymphoma_burkitts(Daudi)6
Lymphoma_burkitts(Raji)6.6
MedullaOblongata6.3
OccipitalLobe4.1
OlfactoryBulb5
Ovary117.65
Pancreas8.45
PancreaticIslet22.85
ParietalLobe5.75
Pituitary11
Placenta524.45
Pons5.2
PrefrontalCortex6.05
Prostate5.95
Salivarygland6.1
SkeletalMuscle6.15
Skin30.2
SmoothMuscle4.85
Spinalcord5.85
SubthalamicNucleus3.95
SuperiorCervicalGanglion13.75
TemporalLobe4.85
Testis6.75
TestisGermCell5.75
TestisIntersitial5.25
TestisLeydigCell5.9
TestisSeminiferousTubule4.6
Thalamus4.45
Thymus10.75
Thyroid8.25
Tongue14.3
Tonsil5.3
Trachea10.05
TrigeminalGanglion9
Uterus10.25
UterusCorpus13.4
WholeBlood190.45
Wholebrain4.65
colon16.65
pineal_day5.62
pineal_night6.4
retina23.975
small_intestine11.5
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_15976_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala3.23 ± 0.86
Basal Forebrain2.77 ± 0.47
Basal Part of Pons2.46 ± 0.5
Cerebellar Cortex2.66 ± 0.74
Cerebellar Nuclei3.63 ± 0.74
Claustrum3.23 ± 0.84
Epithalamus3.55 ± 1.22
Frontal Lobe2.97 ± 0.79
Globus Pallidus4.48 ± 0.38
Hypothalamus2.85 ± 1.1
Insula3.26 ± 0.78
Limbic Lobe3.01 ± 0.81
Mesencephalon3.12 ± 0.97
Myelencephalon3.08 ± 0.78
Occipital Lobe3.21 ± 0.89
Parietal Lobe3.02 ± 0.81
Pontine Tegmentum3.29 ± 0.91
Striatum3.12 ± 0.79
Subthalamus2.68 ± 0.71
Temporal Lobe3.05 ± 0.81
Thalamus3 ± 0.68
White Matter2.78 ± 0.83
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
F13a1CBCerebellum5.23
5.66
F13a1CTXCerebral cortex11.17
7.12
F13a1HIPHippocampal region8.17
7.54
F13a1HPFHippocampal formation8.43
6.34
F13a1HYHypothalamus2.02
1.29
F13a1LSXLateral septal complex7.54
4.44
F13a1MBMidbrain3.09
2.64
F13a1MYMedulla15.24
14.67
F13a1OLFOlfactory bulb15.26
8.62
F13a1PPons6.35
4.7
F13a1PALPallidum2.86
1.8
F13a1RHPRetrohippocampal region9.6
5.42
F13a1sAMYStriatum-like amygdalar nuclei4.69
3.88
F13a1STRStriatum6.61
4.15
F13a1STRdStriatum dorsal region7.63
4.82
F13a1STRvStriatum ventral region3.68
1.77
F13a1THThalamus2.78
4.27
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
F13A_HUMAN_0 0 0 0 KDGTHVVENVDATHIGK PRIDE
F13A_HUMAN_0 0 0 0 STVLTIPEIIIK PRIDE
F13A_HUMAN_101 13 101 113 VEYVIGRYPQENK PRIDE
F13A_HUMAN_114 16 114 129 GTYIPVPIVSELQSGK PRIDE
F13A_HUMAN_114 20 114 133 GTYIPVPIVSELQSGKWGAK PRIDE
F13A_HUMAN_159 13 159 171 MYVAVWTPYGVLR PRIDE
F13A_HUMAN_311 16 311 326 YGQCWVFAGVFNTFLR PRIDE
F13A_HUMAN_38 17 38 54 GVNLQEFLNVTSVHLFK PRIDE
F13A_HUMAN_38 19 38 56 GVNLQEFLNVTSVHLFKER PRIDE
F13A_HUMAN_39 17 39 55 GVNLQEFLNVTSVHLFK PRIDE
F13A_HUMAN_446 17 446 462 KDGTHVVENVDATHIGK PRIDE
F13A_HUMAN_447 16 447 462 DGTHVVENVDATHIGK PRIDE
F13A_HUMAN_468 15 468 482 QIGGDGMMDITDTYK PRIDE
F13A_HUMAN_492 12 492 503 LALETALMYGAK PRIDE
F13A_HUMAN_516 16 516 531 SNVDMDFEVENAVLGK PRIDE
F13A_HUMAN_516 19 516 534 SNVDMDFEVENAVLGKDFK PRIDE
F13A_HUMAN_570 14 570 583 KETFDVTLEPLSFK PRIDE
F13A_HUMAN_570 15 570 584 KETFDVTLEPLSFKK PRIDE
F13A_HUMAN_571 13 571 583 ETFDVTLEPLSFK PRIDE
F13A_HUMAN_571 14 571 584 ETFDVTLEPLSFKK PRIDE
F13A_HUMAN_622 14 622 635 QKSTVLTIPEIIIK PRIDE
F13A_HUMAN_624 12 624 635 STVLTIPEIIIK PRIDE
F13A_HUMAN_625 12 625 636 STVLTIPEIIIK PRIDE
F13A_HUMAN_662 16 662 677 NVWVHLDGPGVTRPMK PRIDE
F13A_HUMAN_662 17 662 678 NVWVHLDGPGVTRPMKK PRIDE
F13A_HUMAN_682 22 682 703 EIRPNSTVQWEEVCRPWVSGHR PRIDE
F13A_HUMAN_70 9 70 78 ENNKLIVRR PRIDE
F13A_HUMAN_704 12 704 715 KLIASMSSDSLR PRIDE
F13A_HUMAN_705 11 705 715 LIASMSSDSLR PRIDE
F13A_HUMAN_716 12 716 727 HVYGELDVQIQR PRIDE
F13A_HUMAN_78 18 78 95 RGQSFYVQIDFSRPYDPR PRIDE
F13A_HUMAN_97 11 97 107 DLFRVEYVIGR PRIDE
F13A_HUMAN_97 17 97 113 DLFRVEYVIGRYPQENK PRIDE
PAp00032963 16 448 463 DGTHVVENVDATHIGK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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