AutismKB 2.0

Annotation Detail for FABP3


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Basic Information Top
Gene Symbol:FABP3 ( FABP11,H-FABP,MDGI,O-FABP )
Gene Full Name: fatty acid binding protein 3, muscle and heart (mammary-derived growth inhibitor)
Band: 1p35.2
Quick LinksEntrez ID:2170; OMIM: 134651; Uniprot ID:FABPH_HUMAN; ENSEMBL ID: ENSG00000121769; HGNC ID: 3557
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst1 / 6231916
fetus21 / 56401237
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult51 / 193912126
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor2 / 2638457
glioma4 / 10688337
head and neck tumor2 / 13630214
kidney tumor0 / 689590 
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor3 / 10312729
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal86 / 336030725
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer1 / 1026809
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland1 / 3319730
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone1 / 7165513
bone marrow0 / 488010 
brain14 / 110098912
cervix0 / 481710 
connective tissue1 / 1492556
ear0 / 162120 
embryonic tissue1 / 2157224
esophagus0 / 202090 
eye0 / 2110540 
heart23 / 89626256
intestine0 / 2344720 
kidney4 / 21177718
larynx1 / 2414541
liver2 / 2077439
lung20 / 33697459
lymph0 / 442700 
lymph node1 / 9161010
mammary gland0 / 1532710 
mouth0 / 670520 
muscle22 / 107715204
nerve0 / 157680 
ovary0 / 1020510 
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx2 / 4132848
pituitary gland0 / 165850 
placenta1 / 2808253
prostate2 / 18934510
salivary gland0 / 201550 
skin0 / 2105740 
spleen0 / 539520 
stomach1 / 9661910
testis3 / 3304429
thymus0 / 811310 
thyroid1 / 4747321
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus9 / 23287838
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 214285_at
Cell line Expression level Expression bar
721_B_lymphoblasts8.3
Adipocyte7.3
AdrenalCortex8.15
Adrenalgland6.2
Amygdala7.15
Appendix8.05
AtrioventricularNode6.4
BDCA4+_DentriticCells7.15
Bonemarrow7.2
BronchialEpithelialCells6.8
CD105+_Endothelial7.1
CD14+_Monocytes7.45
CD19+_BCells(neg._sel.)7.25
CD33+_Myeloid8.65
CD34+8.55
CD4+_Tcells7.15
CD56+_NKCells8
CD71+_EarlyErythroid6.65
CD8+_Tcells6.45
CardiacMyocytes10.1
Caudatenucleus6.35
Cerebellum5.7
CerebellumPeduncles8.3
CiliaryGanglion6.55
CingulateCortex7.65
Colorectaladenocarcinoma7
DorsalRootGanglion6.3
FetalThyroid7.05
Fetalbrain6.9
Fetalliver6.15
Fetallung5.2
GlobusPallidus5.85
Heart198.7
Hypothalamus7.5
Kidney11.9
Leukemia_chronicMyelogenousK-5626.2
Leukemia_promyelocytic-HL-606.2
Leukemialymphoblastic(MOLT-4)5.4
Liver9.8
Lung7.55
Lymphnode5.8
Lymphoma_burkitts(Daudi)9.15
Lymphoma_burkitts(Raji)10.4
MedullaOblongata6.35
OccipitalLobe6.9
OlfactoryBulb5.5
Ovary5.05
Pancreas5.75
PancreaticIslet7.45
ParietalLobe7.85
Pituitary8.2
Placenta6.95
Pons6.85
PrefrontalCortex9.05
Prostate8
Salivarygland6
SkeletalMuscle11.6
Skin6.8
SmoothMuscle7.8
Spinalcord7.45
SubthalamicNucleus7.75
SuperiorCervicalGanglion11.2
TemporalLobe7.2
Testis6
TestisGermCell5.7
TestisIntersitial5.9
TestisLeydigCell7.1
TestisSeminiferousTubule5.95
Thalamus7.7
Thymus5.4
Thyroid8.55
Tongue15.25
Tonsil6.85
Trachea5.8
TrigeminalGanglion8.8
Uterus5.65
UterusCorpus6.65
WholeBlood7.45
Wholebrain5.8
colon7.05
pineal_day9.08
pineal_night8.5
retina8.725
small_intestine6.7
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_15832_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala8.42 ± 0.55
Basal Forebrain7.88 ± 0.78
Basal Part of Pons8.43 ± 0.32
Cerebellar Cortex7.38 ± 0.4
Cerebellar Nuclei8.76 ± 0.52
Claustrum8.62 ± 0.42
Epithalamus6.36 ± 1.04
Frontal Lobe8.47 ± 0.55
Globus Pallidus7.64 ± 0.99
Hypothalamus7.46 ± 0.79
Insula8.36 ± 0.26
Limbic Lobe8.81 ± 0.57
Mesencephalon8.04 ± 0.87
Myelencephalon8 ± 0.88
Occipital Lobe7.53 ± 0.63
Parietal Lobe8.13 ± 0.72
Pontine Tegmentum8.11 ± 0.83
Striatum6.91 ± 1.27
Subthalamus8.4 ± 0.17
Temporal Lobe8.5 ± 0.5
Thalamus7.56 ± 0.57
White Matter5.97 ± 1.21
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Fabp3CBCerebellum0.79
1.17
Fabp3CTXCerebral cortex11.93
10.99
Fabp3HIPHippocampal region11.22
14.02
Fabp3HPFHippocampal formation9.25
11.04
Fabp3HYHypothalamus4.01
3.66
Fabp3LSXLateral septal complex0.93
0.93
Fabp3MBMidbrain1.85
2.61
Fabp3MYMedulla2.84
5.01
Fabp3OLFOlfactory bulb14.99
14.05
Fabp3PPons6.99
11.76
Fabp3PALPallidum3.89
5.59
Fabp3RHPRetrohippocampal region6.51
6.84
Fabp3sAMYStriatum-like amygdalar nuclei3.02
2.83
Fabp3STRStriatum1.26
1.38
Fabp3STRdStriatum dorsal region0.77
0.95
Fabp3STRvStriatum ventral region1.9
1.93
Fabp3THThalamus6.12
6.61
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
FABPH_HUMAN_0 0 0 0 LGVEFDETTADDR PRIDE
FABPH_HUMAN_0 0 0 0 LILTLTHGTAVCTR PRIDE
FABPH_HUMAN_0 0 0 0 SLGVGFATR PRIDE
FABPH_HUMAN_0 0 0 0 WDGQETTLVR PRIDE
FABPH_HUMAN_114 14 114 127 LILTLTHGTAVCTR PRIDE
FABPH_HUMAN_116 12 116 127 LTLTHGTAVCTR PRIDE
FABPH_HUMAN_16 7 16 22 NFDDYMK PRIDE
FABPH_HUMAN_22 9 22 30 SLGVGFATR PRIDE
FABPH_HUMAN_23 9 23 31 SLGVGFATR PRIDE
FABPH_HUMAN_32 14 32 45 QVASMTKPTTIIEK PRIDE
FABPH_HUMAN_46 8 46 53 NGDILTLK PRIDE
FABPH_HUMAN_54 13 54 66 THSTFKNTEISFK PRIDE
FABPH_HUMAN_60 7 60 66 NTEISFK PRIDE
FABPH_HUMAN_66 13 66 78 LGVEFDETTADDR PRIDE
FABPH_HUMAN_67 13 67 79 LGVEFDETTADDR PRIDE
FABPH_HUMAN_67 14 67 80 LGVEFDETTADDRK PRIDE
FABPH_HUMAN_83 9 83 91 SIVTLDGGK PRIDE
FABPH_HUMAN_97 10 97 106 WDGQETTLVR PRIDE
FABPH_HUMAN_98 10 98 107 WDGQETTLVR PRIDE
PAp00073190 14 114 127 LILTLTHGTAVCTR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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