Annotation Detail for CCNY
Basic Information Top
| Gene Symbol: | CCNY ( C10orf9,CBCP1,CCNX,CFP1,FLJ95513 ) |
|---|---|
| Gene Full Name: | cyclin Y |
| Band: | 10p11.21 |
| Quick Links | Entrez ID:219771; OMIM: 612786; Uniprot ID:CCNY_HUMAN; ENSEMBL ID: ENSG00000108100; HGNC ID: 23354 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.14745
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 3 / 70761 | 42 |  |
| blastocyst | 1 / 62319 | 16 | |
| fetus | 44 / 564012 | 78 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 131 / 1939121 | 67 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 2 / 12794 | 156 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 2 / 94178 | 21 | |
| cervical tumor | 1 / 34366 | 29 | |
| chondrosarcoma | 12 / 82823 | 144 | |
| colorectal tumor | 3 / 114246 | 26 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 10 / 119369 | 83 | |
| germ cell tumor | 10 / 263845 | 37 | |
| glioma | 9 / 106883 | 84 | |
| head and neck tumor | 8 / 136302 | 58 | |
| kidney tumor | 4 / 68959 | 58 | |
| leukemia | 2 / 95842 | 20 | |
| liver tumor | 2 / 96359 | 20 | |
| lung tumor | 1 / 103127 | 9 |  |
| lymphoma | 2 / 71755 | 27 | |
| non-neoplasia | 4 / 97250 | 41 | |
| normal | 246 / 3360307 | 73 | |
| ovarian tumor | 4 / 76682 | 52 | |
| pancreatic tumor | 7 / 104616 | 66 | |
| primitive neuroectodermal tumor of the CNS | 3 / 125680 | 23 | |
| prostate cancer | 10 / 102680 | 97 | |
| retinoblastoma | 2 / 46356 | 43 | |
| skin tumor | 2 / 124949 | 16 | |
| soft tissue/muscle tissue tumor | 5 / 125191 | 39 | |
| uterine tumor | 5 / 90257 | 55 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 4 / 33197 | 120 | |
| ascites | 2 / 40015 | 49 | |
| bladder | 2 / 29757 | 67 | |
| blood | 1 / 123478 | 8 | |
| bone | 10 / 71655 | 139 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 48 / 1100989 | 43 | |
| cervix | 1 / 48171 | 20 | |
| connective tissue | 12 / 149255 | 80 | |
| ear | 2 / 16212 | 123 | |
| embryonic tissue | 8 / 215722 | 37 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 18 / 211054 | 85 | |
| heart | 11 / 89626 | 122 | |
| intestine | 14 / 234472 | 59 | |
| kidney | 20 / 211777 | 94 | |
| larynx | 0 / 24145 | 0 | |
| liver | 2 / 207743 | 9 | |
| lung | 33 / 336974 | 97 | |
| lymph | 1 / 44270 | 22 | |
| lymph node | 11 / 91610 | 120 | |
| mammary gland | 6 / 153271 | 39 | |
| mouth | 3 / 67052 | 44 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 6 / 102051 | 58 | |
| pancreas | 9 / 214812 | 41 | |
| parathyroid | 2 / 20539 | 97 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 2 / 16585 | 120 | |
| placenta | 4 / 280825 | 14 | |
| prostate | 13 / 189345 | 68 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 11 / 210574 | 52 | |
| spleen | 13 / 53952 | 240 |  |
| stomach | 7 / 96619 | 72 | |
| testis | 63 / 330442 | 190 | |
| thymus | 1 / 81131 | 12 | |
| thyroid | 5 / 47473 | 105 | |
| tonsil | 1 / 16999 | 58 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 11 / 232878 | 47 | |
| vascular | 1 / 51780 | 19 | |
Microarray in - Probe name: A_23_P434421
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 4.96 ± 0.53 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 4.96 ± 0.58 | |
| Basal Part of Pons | 5 ± 0.62 | |
| Cerebellar Cortex | 4.51 ± 0.48 | |
| Cerebellar Nuclei | 5.08 ± 0.38 | |
| Claustrum | 4.76 ± 0.72 | |
| Epithalamus | 4.83 ± 0.83 | |
| Frontal Lobe | 5.32 ± 0.54 | |
| Globus Pallidus | 5.2 ± 0.41 | |
| Hypothalamus | 4.86 ± 0.62 | |
| Insula | 5.27 ± 0.44 | |
| Limbic Lobe | 4.99 ± 0.64 | |
| Mesencephalon | 5.07 ± 0.64 | |
| Myelencephalon | 5.1 ± 0.59 | |
| Occipital Lobe | 4.38 ± 0.7 | |
| Parietal Lobe | 4.97 ± 0.54 | |
| Pontine Tegmentum | 5.08 ± 0.63 | |
| Striatum | 5.27 ± 0.58 | |
| Subthalamus | 5.16 ± 0.49 | |
| Temporal Lobe | 5.26 ± 0.53 | |
| Thalamus | 5.2 ± 0.56 | |
| White Matter | 5.52 ± 0.18 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| 5730405I09Rik | CB | Cerebellum | 20.84 | |
| 42.69 | | |||
| 5730405I09Rik | CTX | Cerebral cortex | 100 | |
| 100 | | |||
| 5730405I09Rik | HIP | Hippocampal region | 100 | |
| 100 | | |||
| 5730405I09Rik | HPF | Hippocampal formation | 100 | |
| 100 | | |||
| 5730405I09Rik | HY | Hypothalamus | 8.22 | |
| 7.9 | | |||
| 5730405I09Rik | LSX | Lateral septal complex | 49.13 | |
| 54.13 | | |||
| 5730405I09Rik | MB | Midbrain | 19.12 | |
| 22.74 | | |||
| 5730405I09Rik | MY | Medulla | 17.34 | |
| 23.07 | | |||
| 5730405I09Rik | OLF | Olfactory bulb | 80.6 | |
| 100 | | |||
| 5730405I09Rik | P | Pons | 12.83 | |
| 17.89 | | |||
| 5730405I09Rik | PAL | Pallidum | 12.77 | |
| 14.45 | | |||
| 5730405I09Rik | RHP | Retrohippocampal region | 100 | |
| 100 | | |||
| 5730405I09Rik | sAMY | Striatum-like amygdalar nuclei | 43.59 | |
| 49.9 | | |||
| 5730405I09Rik | STR | Striatum | 54.47 | |
| 51.86 | | |||
| 5730405I09Rik | STRd | Striatum dorsal region | 58.12 | |
| 53.99 | | |||
| 5730405I09Rik | STRv | Striatum ventral region | 56.28 | |
| 49.8 | | |||
| 5730405I09Rik | TH | Thalamus | 29.26 | |
| 32.75 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00036262 | 15 | 86 | 100 | MLLDIFDENLHPLSK | Peptide Atlas |