Annotation Detail for CCDC7
Basic Information Top
| Gene Symbol: | CCDC7 ( BioT2-A,BioT2-B,BioT2-C,DKFZp686N0559,FLJ32762,RP11-479G22.1 ) |
|---|---|
| Gene Full Name: | coiled-coil domain containing 7 |
| Band: | 10p11.22 |
| Quick Links | Entrez ID:221016; OMIM: NA; Uniprot ID:CCDC7_HUMAN; ENSEMBL ID: ENSG00000216937; HGNC ID: 26533 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.585464
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 1 / 62319 | 16 |  |
| fetus | 9 / 564012 | 15 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 29 / 1939121 | 14 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 11 / 17475 | 629 |  |
| breast (mammary gland) tumor | 1 / 94178 | 10 |  |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 1 / 114246 | 8 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 10 / 263845 | 37 | |
| glioma | 3 / 106883 | 28 | |
| head and neck tumor | 1 / 136302 | 7 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 4 / 95842 | 41 | |
| liver tumor | 2 / 96359 | 20 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 1 / 97250 | 10 | |
| normal | 73 / 3360307 | 21 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 3 / 102680 | 29 | |
| retinoblastoma | 2 / 46356 | 43 | |
| skin tumor | 5 / 124949 | 40 | |
| soft tissue/muscle tissue tumor | 7 / 125191 | 55 |  |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 11 / 29757 | 369 | |
| blood | 0 / 123478 | 0 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 5 / 48801 | 102 | |
| brain | 16 / 1100989 | 14 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 7 / 149255 | 46 | |
| ear | 1 / 16212 | 61 | |
| embryonic tissue | 2 / 215722 | 9 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 3 / 211054 | 14 | |
| heart | 0 / 89626 | 0 | |
| intestine | 1 / 234472 | 4 | |
| kidney | 2 / 211777 | 9 | |
| larynx | 0 / 24145 | 0 | |
| liver | 5 / 207743 | 24 | |
| lung | 3 / 336974 | 8 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 1 / 153271 | 6 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 1 / 107715 | 9 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 2 / 214812 | 9 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 0 / 280825 | 0 | |
| prostate | 4 / 189345 | 21 | |
| salivary gland | 4 / 20155 | 198 | |
| skin | 6 / 210574 | 28 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 57 / 330442 | 172 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 0 / 232878 | 0 | |
| vascular | 1 / 51780 | 19 | |
Microarray in - Probe name: CUST_12464_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 7.37 ± 0.45 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 8.18 ± 0.39 | |
| Basal Part of Pons | 7.25 ± 0.41 | |
| Cerebellar Cortex | 7.57 ± 0.31 | |
| Cerebellar Nuclei | 7.84 ± 0.64 | |
| Claustrum | 7.53 ± 0.41 | |
| Epithalamus | 7.61 ± 0.58 | |
| Frontal Lobe | 7.32 ± 0.59 | |
| Globus Pallidus | 9.19 ± 0.25 | |
| Hypothalamus | 7.55 ± 0.43 | |
| Insula | 7.19 ± 0.34 | |
| Limbic Lobe | 7.17 ± 0.6 | |
| Mesencephalon | 7.83 ± 0.56 | |
| Myelencephalon | 7.54 ± 0.62 | |
| Occipital Lobe | 7.64 ± 0.5 | |
| Parietal Lobe | 7.45 ± 0.54 | |
| Pontine Tegmentum | 7.68 ± 0.51 | |
| Striatum | 7.91 ± 0.76 | |
| Subthalamus | 8.15 ± 0.42 | |
| Temporal Lobe | 7.36 ± 0.5 | |
| Thalamus | 7.8 ± 0.38 | |
| White Matter | 9.51 ± 0.68 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Ccdc7 | CB | Cerebellum | 2.01 | |
| 3.9 | | |||
| Ccdc7 | CTX | Cerebral cortex | 1.04 | |
| 1.65 | | |||
| Ccdc7 | HIP | Hippocampal region | 0.38 | |
| 0.65 | | |||
| Ccdc7 | HPF | Hippocampal formation | 0.36 | |
| 0.55 | | |||
| Ccdc7 | HY | Hypothalamus | 0.18 | |
| 0.21 | | |||
| Ccdc7 | LSX | Lateral septal complex | 0.12 | |
| 0.11 | | |||
| Ccdc7 | MB | Midbrain | 0.26 | |
| 0.4 | | |||
| Ccdc7 | MY | Medulla | 0.58 | |
| 0.92 | | |||
| Ccdc7 | OLF | Olfactory bulb | 0.46 | |
| 1.44 | | |||
| Ccdc7 | P | Pons | 0.16 | |
| 0.2 | | |||
| Ccdc7 | PAL | Pallidum | 0.47 | |
| 0.61 | | |||
| Ccdc7 | RHP | Retrohippocampal region | 0.28 | |
| 0.32 | | |||
| Ccdc7 | sAMY | Striatum-like amygdalar nuclei | 0.3 | |
| 0.69 | | |||
| Ccdc7 | STR | Striatum | 0.22 | |
| 0.32 | | |||
| Ccdc7 | STRd | Striatum dorsal region | 0.1 | |
| 0.21 | | |||
| Ccdc7 | STRv | Striatum ventral region | 0.57 | |
| 0.51 | | |||
| Ccdc7 | TH | Thalamus | 0.42 | |
| 0.66 | |