AutismKB 2.0

Annotation Detail for FAM171A1


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Basic Information Top
Gene Symbol:FAM171A1 ( C10orf38,FLJ12884,MGC130014,MGC130015 )
Gene Full Name: family with sequence similarity 171, member A1
Band: 10p13
Quick LinksEntrez ID:221061; OMIM: NA; Uniprot ID:F1711_HUMAN; ENSEMBL ID: ENSG00000148468; HGNC ID: 23522
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body5 / 7076170
blastocyst3 / 6231948
fetus28 / 56401249
neonate0 / 310970 
infant3 / 23620127
juvenile4 / 5555671
adult65 / 193912133
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma6 / 8282372
colorectal tumor5 / 11424643
esophageal tumor0 / 172900 
gastrointestinal tumor3 / 11936925
germ cell tumor12 / 26384545
glioma7 / 10688365
head and neck tumor0 / 1363020 
kidney tumor4 / 6895958
leukemia2 / 9584220
liver tumor6 / 9635962
lung tumor2 / 10312719
lymphoma0 / 717550 
non-neoplasia5 / 9725051
normal316 / 336030794
ovarian tumor0 / 766820 
pancreatic tumor1 / 1046169
primitive neuroectodermal tumor of the CNS4 / 12568031
prostate cancer0 / 1026800 
retinoblastoma3 / 4635664
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor1 / 1251917
uterine tumor2 / 9025722
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland1 / 3319730
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone4 / 7165555
bone marrow0 / 488010 
brain255 / 1100989231
cervix0 / 481710 
connective tissue4 / 14925526
ear0 / 162120 
embryonic tissue12 / 21572255
esophagus0 / 202090 
eye15 / 21105471
heart8 / 8962689
intestine8 / 23447234
kidney13 / 21177761
larynx0 / 241450 
liver8 / 20774338
lung7 / 33697420
lymph0 / 442700 
lymph node2 / 9161021
mammary gland3 / 15327119
mouth0 / 670520 
muscle3 / 10771527
nerve2 / 15768126
ovary0 / 1020510 
pancreas8 / 21481237
parathyroid2 / 2053997
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta0 / 2808250 
prostate3 / 18934515
salivary gland0 / 201550 
skin3 / 21057414
spleen7 / 53952129
stomach3 / 9661931
testis11 / 33044233
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea1 / 5241319
umbilical cord0 / 136800 
uterus10 / 23287842
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 212771_at
Cell line Expression level Expression bar
721_B_lymphoblasts8.35
Adipocyte30.4
AdrenalCortex13.4
Adrenalgland12.15
Amygdala563.55
Appendix16.05
AtrioventricularNode10.2
BDCA4+_DentriticCells7
Bonemarrow7.9
BronchialEpithelialCells33.3
CD105+_Endothelial8
CD14+_Monocytes7.4
CD19+_BCells(neg._sel.)7.3
CD33+_Myeloid9.3
CD34+14.6
CD4+_Tcells16.65
CD56+_NKCells9.2
CD71+_EarlyErythroid6.75
CD8+_Tcells28.1
CardiacMyocytes131.85
Caudatenucleus660.75
Cerebellum162.2
CerebellumPeduncles204.1
CiliaryGanglion14.55
CingulateCortex419.1
Colorectaladenocarcinoma12.9
DorsalRootGanglion29.65
FetalThyroid22.95
Fetalbrain306.1
Fetalliver12.6
Fetallung51.3
GlobusPallidus211.75
Heart14.2
Hypothalamus816.7
Kidney109.85
Leukemia_chronicMyelogenousK-56262.2
Leukemia_promyelocytic-HL-606.05
Leukemialymphoblastic(MOLT-4)23.35
Liver38.15
Lung27.9
Lymphnode19.35
Lymphoma_burkitts(Daudi)9.95
Lymphoma_burkitts(Raji)11.2
MedullaOblongata396.75
OccipitalLobe378.3
OlfactoryBulb404.05
Ovary7.3
Pancreas75.05
PancreaticIslet42
ParietalLobe458
Pituitary12.8
Placenta8.15
Pons326.7
PrefrontalCortex794.25
Prostate67.8
Salivarygland24.3
SkeletalMuscle15
Skin6.85
SmoothMuscle188.1
Spinalcord886.05
SubthalamicNucleus159.1
SuperiorCervicalGanglion33.95
TemporalLobe198.05
Testis7.45
TestisGermCell9.05
TestisIntersitial6.9
TestisLeydigCell17.75
TestisSeminiferousTubule7
Thalamus358.45
Thymus11.3
Thyroid18.75
Tongue10.2
Tonsil11.2
Trachea31.55
TrigeminalGanglion40.05
Uterus42.8
UterusCorpus23.6
WholeBlood9.95
Wholebrain504.8
colon146.2
pineal_day40.4
pineal_night28.36
retina494.425
small_intestine85.8
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_5867_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala5.7 ± 0.39
Basal Forebrain5.44 ± 0.25
Basal Part of Pons5.74 ± 0.4
Cerebellar Cortex5.28 ± 0.24
Cerebellar Nuclei5.7 ± 0.37
Claustrum5.34 ± 0.52
Epithalamus5.39 ± 0.46
Frontal Lobe5.62 ± 0.44
Globus Pallidus6.19 ± 0.26
Hypothalamus5.4 ± 0.5
Insula5.47 ± 0.27
Limbic Lobe5.91 ± 0.47
Mesencephalon5.59 ± 0.61
Myelencephalon5.75 ± 0.53
Occipital Lobe6.02 ± 0.45
Parietal Lobe5.76 ± 0.39
Pontine Tegmentum5.76 ± 0.44
Striatum6.74 ± 0.39
Subthalamus5.87 ± 0.22
Temporal Lobe5.56 ± 0.36
Thalamus5.71 ± 0.45
White Matter7.31 ± 0.17
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
9630050M13RikCBCerebellum7.34
8.11
9630050M13RikCTXCerebral cortex51.94
43.67
9630050M13RikHIPHippocampal region37.92
69.37
9630050M13RikHPFHippocampal formation37.16
53.03
9630050M13RikHYHypothalamus3.06
2.44
9630050M13RikLSXLateral septal complex27.66
25.09
9630050M13RikMBMidbrain5.41
4.74
9630050M13RikMYMedulla7.18
8.5
9630050M13RikOLFOlfactory bulb45.95
45.77
9630050M13RikPPons6.45
7.28
9630050M13RikPALPallidum10.6
9.59
9630050M13RikRHPRetrohippocampal region36.68
32.71
9630050M13RiksAMYStriatum-like amygdalar nuclei24.96
19.48
9630050M13RikSTRStriatum56.62
46.28
9630050M13RikSTRdStriatum dorsal region60.83
51.72
9630050M13RikSTRvStriatum ventral region57.69
47.63
9630050M13RikTHThalamus4.48
4.06
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00513038 18 855 872 SAHEEEEDDDDDDQGEDK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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