Annotation Detail for ALKBH3
Basic Information Top
| Gene Symbol: | ALKBH3 ( ABH3,DEPC-1,DEPC1,FLJ43614,MGC118790,MGC118792,MGC118793,PCA1 ) |
|---|---|
| Gene Full Name: | alkB, alkylation repair homolog 3 (E. coli) |
| Band: | 11p11.2 |
| Quick Links | Entrez ID:221120; OMIM: 610603; Uniprot ID:ALKB3_HUMAN; ENSEMBL ID: ENSG00000166199; HGNC ID: 30141 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.720708
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 2 / 70761 | 28 |  |
| blastocyst | 3 / 62319 | 48 | |
| fetus | 9 / 564012 | 15 | |
| neonate | 2 / 31097 | 64 |  |
| infant | 2 / 23620 | 84 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 67 / 1939121 | 34 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 2 / 94178 | 21 | |
| cervical tumor | 2 / 34366 | 58 | |
| chondrosarcoma | 5 / 82823 | 60 | |
| colorectal tumor | 11 / 114246 | 96 | |
| esophageal tumor | 1 / 17290 | 57 | |
| gastrointestinal tumor | 3 / 119369 | 25 | |
| germ cell tumor | 12 / 263845 | 45 | |
| glioma | 1 / 106883 | 9 |  |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 2 / 68959 | 29 | |
| leukemia | 2 / 95842 | 20 | |
| liver tumor | 1 / 96359 | 10 | |
| lung tumor | 6 / 103127 | 58 | |
| lymphoma | 1 / 71755 | 13 | |
| non-neoplasia | 2 / 97250 | 20 | |
| normal | 88 / 3360307 | 26 | |
| ovarian tumor | 3 / 76682 | 39 | |
| pancreatic tumor | 8 / 104616 | 76 | |
| primitive neuroectodermal tumor of the CNS | 6 / 125680 | 47 | |
| prostate cancer | 7 / 102680 | 68 | |
| retinoblastoma | 2 / 46356 | 43 | |
| skin tumor | 5 / 124949 | 40 | |
| soft tissue/muscle tissue tumor | 8 / 125191 | 63 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 3 / 40015 | 74 | |
| bladder | 1 / 29757 | 33 | |
| blood | 5 / 123478 | 40 | |
| bone | 3 / 71655 | 41 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 21 / 1100989 | 19 | |
| cervix | 2 / 48171 | 41 | |
| connective tissue | 8 / 149255 | 53 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 8 / 215722 | 37 | |
| esophagus | 2 / 20209 | 98 | |
| eye | 10 / 211054 | 47 | |
| heart | 1 / 89626 | 11 | |
| intestine | 13 / 234472 | 55 | |
| kidney | 9 / 211777 | 42 | |
| larynx | 0 / 24145 | 0 | |
| liver | 4 / 207743 | 19 | |
| lung | 15 / 336974 | 44 | |
| lymph | 1 / 44270 | 22 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 3 / 153271 | 19 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 4 / 107715 | 37 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 6 / 102051 | 58 | |
| pancreas | 8 / 214812 | 37 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 9 / 280825 | 32 | |
| prostate | 12 / 189345 | 63 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 6 / 210574 | 28 | |
| spleen | 5 / 53952 | 92 | |
| stomach | 0 / 96619 | 0 | |
| testis | 21 / 330442 | 63 | |
| thymus | 2 / 81131 | 24 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 2 / 13680 | 146 | |
| uterus | 4 / 232878 | 17 | |
| vascular | 1 / 51780 | 19 | |
Microarray in - Probe name: CUST_11879_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 5.05 ± 0.48 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 4.83 ± 0.37 | |
| Basal Part of Pons | 5.27 ± 0.28 | |
| Cerebellar Cortex | 5.48 ± 0.24 | |
| Cerebellar Nuclei | 5.53 ± 0.46 | |
| Claustrum | 4.82 ± 0.66 | |
| Epithalamus | 5.1 ± 0.22 | |
| Frontal Lobe | 5.19 ± 0.39 | |
| Globus Pallidus | 4.92 ± 0.36 | |
| Hypothalamus | 4.88 ± 0.49 | |
| Insula | 5 ± 0.37 | |
| Limbic Lobe | 5.15 ± 0.5 | |
| Mesencephalon | 5.13 ± 0.48 | |
| Myelencephalon | 5.05 ± 0.48 | |
| Occipital Lobe | 5.11 ± 0.33 | |
| Parietal Lobe | 5.1 ± 0.47 | |
| Pontine Tegmentum | 5.12 ± 0.47 | |
| Striatum | 4.86 ± 0.39 | |
| Subthalamus | 5.5 ± 0.06 | |
| Temporal Lobe | 5.08 ± 0.43 | |
| Thalamus | 4.95 ± 0.4 | |
| White Matter | 5.49 ± 0.37 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Alkbh3 | CB | Cerebellum | 1.66 | |
| 2.07 | | |||
| Alkbh3 | CTX | Cerebral cortex | 2.98 | |
| 2.24 | | |||
| Alkbh3 | HIP | Hippocampal region | 5.87 | |
| 5.74 | | |||
| Alkbh3 | HPF | Hippocampal formation | 5.93 | |
| 5.36 | | |||
| Alkbh3 | HY | Hypothalamus | 9.75 | |
| 8.21 | | |||
| Alkbh3 | LSX | Lateral septal complex | 1.99 | |
| 1.56 | | |||
| Alkbh3 | MB | Midbrain | 3.88 | |
| 5.38 | | |||
| Alkbh3 | MY | Medulla | 3.38 | |
| 4.89 | | |||
| Alkbh3 | OLF | Olfactory bulb | 10.13 | |
| 7.21 | | |||
| Alkbh3 | P | Pons | 7.62 | |
| 9.82 | | |||
| Alkbh3 | PAL | Pallidum | 4.04 | |
| 3.6 | | |||
| Alkbh3 | RHP | Retrohippocampal region | 6.33 | |
| 4.98 | | |||
| Alkbh3 | sAMY | Striatum-like amygdalar nuclei | 4.3 | |
| 3.03 | | |||
| Alkbh3 | STR | Striatum | 1.94 | |
| 1.43 | | |||
| Alkbh3 | STRd | Striatum dorsal region | 0.63 | |
| 0.47 | | |||
| Alkbh3 | STRv | Striatum ventral region | 5.35 | |
| 3.62 | | |||
| Alkbh3 | TH | Thalamus | 3.63 | |
| 2.68 | |