Annotation Detail for SPATA13
Basic Information Top
| Gene Symbol: | SPATA13 ( ARHGEF29,ASEF2,FLJ31208,FLJ35435,MGC129988,MGC129989 ) |
|---|---|
| Gene Full Name: | spermatogenesis associated 13 |
| Band: | 13q12.12 |
| Quick Links | Entrez ID:221178; OMIM: 613324; Uniprot ID:SPT13_HUMAN; ENSEMBL ID: ENSG00000182957; HGNC ID: 23222 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.595391
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 2 / 70761 | 28 |  |
| blastocyst | 2 / 62319 | 32 | |
| fetus | 23 / 564012 | 40 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 2 / 55556 | 35 | |
| adult | 93 / 1939121 | 47 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 14 / 94178 | 148 |  |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 1 / 82823 | 12 | |
| colorectal tumor | 4 / 114246 | 35 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 5 / 119369 | 41 | |
| germ cell tumor | 3 / 263845 | 11 | |
| glioma | 2 / 106883 | 18 | |
| head and neck tumor | 4 / 136302 | 29 | |
| kidney tumor | 2 / 68959 | 29 | |
| leukemia | 2 / 95842 | 20 | |
| liver tumor | 2 / 96359 | 20 | |
| lung tumor | 1 / 103127 | 9 |  |
| lymphoma | 2 / 71755 | 27 | |
| non-neoplasia | 3 / 97250 | 30 | |
| normal | 172 / 3360307 | 51 | |
| ovarian tumor | 4 / 76682 | 52 | |
| pancreatic tumor | 55 / 104616 | 525 |  |
| primitive neuroectodermal tumor of the CNS | 1 / 125680 | 7 | |
| prostate cancer | 2 / 102680 | 19 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 2 / 124949 | 16 | |
| soft tissue/muscle tissue tumor | 1 / 125191 | 7 | |
| uterine tumor | 10 / 90257 | 110 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 2 / 40015 | 49 | |
| bladder | 0 / 29757 | 0 | |
| blood | 11 / 123478 | 89 | |
| bone | 1 / 71655 | 13 | |
| bone marrow | 1 / 48801 | 20 | |
| brain | 60 / 1100989 | 54 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 2 / 149255 | 13 | |
| ear | 2 / 16212 | 123 | |
| embryonic tissue | 7 / 215722 | 32 | |
| esophagus | 1 / 20209 | 49 | |
| eye | 5 / 211054 | 23 | |
| heart | 0 / 89626 | 0 | |
| intestine | 11 / 234472 | 46 | |
| kidney | 14 / 211777 | 66 | |
| larynx | 1 / 24145 | 41 | |
| liver | 4 / 207743 | 19 | |
| lung | 7 / 336974 | 20 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 12 / 91610 | 130 | |
| mammary gland | 18 / 153271 | 117 | |
| mouth | 2 / 67052 | 29 | |
| muscle | 4 / 107715 | 37 | |
| nerve | 2 / 15768 | 126 | |
| ovary | 5 / 102051 | 48 | |
| pancreas | 57 / 214812 | 265 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 1 / 41328 | 24 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 15 / 280825 | 53 | |
| prostate | 7 / 189345 | 36 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 2 / 210574 | 9 | |
| spleen | 13 / 53952 | 240 | |
| stomach | 6 / 96619 | 62 | |
| testis | 8 / 330442 | 24 | |
| thymus | 3 / 81131 | 36 | |
| thyroid | 3 / 47473 | 63 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 5 / 52413 | 95 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 12 / 232878 | 51 | |
| vascular | 1 / 51780 | 19 | |
Microarray in - Probe name: CUST_13058_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 3.91 ± 0.7 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 4.22 ± 0.26 | |
| Basal Part of Pons | 3.88 ± 0.79 | |
| Cerebellar Cortex | 3.19 ± 0.51 | |
| Cerebellar Nuclei | 4.28 ± 0.46 | |
| Claustrum | 3.51 ± 0.64 | |
| Epithalamus | 4.47 ± 0.55 | |
| Frontal Lobe | 3.76 ± 0.83 | |
| Globus Pallidus | 5.14 ± 0.44 | |
| Hypothalamus | 3.21 ± 0.91 | |
| Insula | 3.4 ± 0.49 | |
| Limbic Lobe | 3.97 ± 0.94 | |
| Mesencephalon | 3.75 ± 0.74 | |
| Myelencephalon | 3.81 ± 0.83 | |
| Occipital Lobe | 3.38 ± 0.77 | |
| Parietal Lobe | 3.64 ± 0.78 | |
| Pontine Tegmentum | 3.79 ± 0.76 | |
| Striatum | 5.47 ± 0.57 | |
| Subthalamus | 4.1 ± 0.31 | |
| Temporal Lobe | 3.55 ± 0.72 | |
| Thalamus | 3.6 ± 0.65 | |
| White Matter | 6.35 ± 0.28 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Spata13 | CB | Cerebellum | 11.71 | |
| 14.44 | | |||
| Spata13 | CTX | Cerebral cortex | 7.33 | |
| 5.1 | | |||
| Spata13 | HIP | Hippocampal region | 12.74 | |
| 21.42 | | |||
| Spata13 | HPF | Hippocampal formation | 10.1 | |
| 13.63 | | |||
| Spata13 | HY | Hypothalamus | 2.24 | |
| 1.64 | | |||
| Spata13 | LSX | Lateral septal complex | 20.77 | |
| 16.51 | | |||
| Spata13 | MB | Midbrain | 1.88 | |
| 1.93 | | |||
| Spata13 | MY | Medulla | 7.18 | |
| 7.86 | | |||
| Spata13 | OLF | Olfactory bulb | 22.26 | |
| 19.06 | | |||
| Spata13 | P | Pons | 4.73 | |
| 4.38 | | |||
| Spata13 | PAL | Pallidum | 7.55 | |
| 6.14 | | |||
| Spata13 | RHP | Retrohippocampal region | 6.6 | |
| 4.9 | | |||
| Spata13 | sAMY | Striatum-like amygdalar nuclei | 19.52 | |
| 19.08 | | |||
| Spata13 | STR | Striatum | 19.97 | |
| 15.42 | | |||
| Spata13 | STRd | Striatum dorsal region | 11.18 | |
| 7.63 | | |||
| Spata13 | STRv | Striatum ventral region | 43.66 | |
| 32.94 | | |||
| Spata13 | TH | Thalamus | 2.89 | |
| 3.15 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00082083 | 16 | 599 | 614 | CPVAPPHQGLHPIHQR | Peptide Atlas |