Annotation Detail for CPNE2
Basic Information Top
| Gene Symbol: | CPNE2 ( COPN2,CPN2,DKFZp686E06199,MGC16924 ) |
|---|---|
| Gene Full Name: | copine II |
| Band: | 16q13 |
| Quick Links | Entrez ID:221184; OMIM: 604206; Uniprot ID:CPNE2_HUMAN; ENSEMBL ID: ENSG00000140848; HGNC ID: 2315 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.339809
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 4 / 70761 | 56 |  |
| blastocyst | 2 / 62319 | 32 |  |
| fetus | 22 / 564012 | 39 | |
| neonate | 1 / 31097 | 32 | |
| infant | 1 / 23620 | 42 | |
| juvenile | 2 / 55556 | 35 | |
| adult | 77 / 1939121 | 39 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 7 / 82823 | 84 | |
| colorectal tumor | 6 / 114246 | 52 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 11 / 263845 | 41 | |
| glioma | 7 / 106883 | 65 | |
| head and neck tumor | 3 / 136302 | 22 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 12 / 95842 | 125 | |
| liver tumor | 1 / 96359 | 10 |  |
| lung tumor | 7 / 103127 | 67 | |
| lymphoma | 2 / 71755 | 27 | |
| non-neoplasia | 2 / 97250 | 20 | |
| normal | 125 / 3360307 | 37 | |
| ovarian tumor | 3 / 76682 | 39 | |
| pancreatic tumor | 10 / 104616 | 95 | |
| primitive neuroectodermal tumor of the CNS | 3 / 125680 | 23 | |
| prostate cancer | 8 / 102680 | 77 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 12 / 124949 | 96 | |
| soft tissue/muscle tissue tumor | 14 / 125191 | 111 | |
| uterine tumor | 6 / 90257 | 66 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 2 / 33197 | 60 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 1 / 29757 | 33 | |
| blood | 12 / 123478 | 97 | |
| bone | 2 / 71655 | 27 | |
| bone marrow | 3 / 48801 | 61 | |
| brain | 37 / 1100989 | 33 | |
| cervix | 3 / 48171 | 62 | |
| connective tissue | 6 / 149255 | 40 | |
| ear | 2 / 16212 | 123 | |
| embryonic tissue | 10 / 215722 | 46 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 14 / 211054 | 66 | |
| heart | 3 / 89626 | 33 | |
| intestine | 14 / 234472 | 59 | |
| kidney | 3 / 211777 | 14 | |
| larynx | 1 / 24145 | 41 | |
| liver | 3 / 207743 | 14 | |
| lung | 18 / 336974 | 53 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 4 / 91610 | 43 | |
| mammary gland | 1 / 153271 | 6 | |
| mouth | 1 / 67052 | 14 | |
| muscle | 6 / 107715 | 55 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 5 / 102051 | 48 | |
| pancreas | 12 / 214812 | 55 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 1 / 41328 | 24 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 12 / 280825 | 42 | |
| prostate | 11 / 189345 | 58 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 12 / 210574 | 56 | |
| spleen | 3 / 53952 | 55 | |
| stomach | 0 / 96619 | 0 | |
| testis | 9 / 330442 | 27 | |
| thymus | 2 / 81131 | 24 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 1 / 13680 | 73 | |
| uterus | 14 / 232878 | 60 | |
| vascular | 1 / 51780 | 19 | |
Microarray in - Probe name: CUST_29_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 3.74 ± 0.54 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 3.55 ± 0.33 | |
| Basal Part of Pons | 3.22 ± 0.49 | |
| Cerebellar Cortex | 3.22 ± 0.69 | |
| Cerebellar Nuclei | 3.32 ± 0.56 | |
| Claustrum | 3.37 ± 0.97 | |
| Epithalamus | 3.84 ± 0.86 | |
| Frontal Lobe | 3.35 ± 0.72 | |
| Globus Pallidus | 4.36 ± 0.51 | |
| Hypothalamus | 3.69 ± 0.52 | |
| Insula | 2.98 ± 0.67 | |
| Limbic Lobe | 3.39 ± 0.76 | |
| Mesencephalon | 3.51 ± 0.85 | |
| Myelencephalon | 3.44 ± 0.66 | |
| Occipital Lobe | 3.11 ± 0.78 | |
| Parietal Lobe | 3.29 ± 0.68 | |
| Pontine Tegmentum | 3.39 ± 0.71 | |
| Striatum | 3.69 ± 0.5 | |
| Subthalamus | 3.33 ± 0.29 | |
| Temporal Lobe | 3.38 ± 0.58 | |
| Thalamus | 3.53 ± 0.63 | |
| White Matter | 5.35 ± 0.36 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Cpne2 | CB | Cerebellum | 62.43 | |
| 100 | | |||
| Cpne2 | CTX | Cerebral cortex | 59.28 | |
| 44.24 | | |||
| Cpne2 | HIP | Hippocampal region | 49.01 | |
| 79.7 | | |||
| Cpne2 | HPF | Hippocampal formation | 52.45 | |
| 64.74 | | |||
| Cpne2 | HY | Hypothalamus | 71.67 | |
| 47.51 | | |||
| Cpne2 | LSX | Lateral septal complex | 80.68 | |
| 63.66 | | |||
| Cpne2 | MB | Midbrain | 20.13 | |
| 14.13 | | |||
| Cpne2 | MY | Medulla | 26.41 | |
| 28.16 | | |||
| Cpne2 | OLF | Olfactory bulb | 74.22 | |
| 56.61 | | |||
| Cpne2 | P | Pons | 30.39 | |
| 22.07 | | |||
| Cpne2 | PAL | Pallidum | 56.6 | |
| 45.22 | | |||
| Cpne2 | RHP | Retrohippocampal region | 55.73 | |
| 47.5 | | |||
| Cpne2 | sAMY | Striatum-like amygdalar nuclei | 100 | |
| 80.62 | | |||
| Cpne2 | STR | Striatum | 84.81 | |
| 56.64 | | |||
| Cpne2 | STRd | Striatum dorsal region | 72.77 | |
| 45.64 | | |||
| Cpne2 | STRv | Striatum ventral region | 100 | |
| 65.72 | | |||
| Cpne2 | TH | Thalamus | 56.03 | |
| 45.86 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00412132 | 9 | 501 | 509 | DIVQFVPFR | Peptide Atlas |