Annotation Detail for PHACTR1
Basic Information Top
| Gene Symbol: | PHACTR1 ( KIAA1733,MGC126575,MGC126577,RPEL,RPEL1,dJ257A7.2 ) |
|---|---|
| Gene Full Name: | phosphatase and actin regulator 1 |
| Band: | 6p24.1 |
| Quick Links | Entrez ID:221692; OMIM: 608723; Uniprot ID:PHAR1_HUMAN; ENSEMBL ID: ENSG00000112137; HGNC ID: 20990 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.436996
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 1 / 62319 | 16 |  |
| fetus | 12 / 564012 | 21 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 22 / 1939121 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 1 / 82823 | 12 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 9 / 263845 | 34 | |
| glioma | 4 / 106883 | 37 | |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 2 / 95842 | 20 | |
| liver tumor | 2 / 96359 | 20 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 1 / 71755 | 13 | |
| non-neoplasia | 4 / 97250 | 41 | |
| normal | 58 / 3360307 | 17 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 1 / 104616 | 9 |  |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 5 / 124949 | 40 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 1 / 90257 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 2 / 123478 | 16 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 2 / 48801 | 40 | |
| brain | 25 / 1100989 | 22 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 1 / 149255 | 6 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 2 / 215722 | 9 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 7 / 211054 | 33 | |
| heart | 1 / 89626 | 11 | |
| intestine | 0 / 234472 | 0 | |
| kidney | 5 / 211777 | 23 | |
| larynx | 0 / 24145 | 0 | |
| liver | 2 / 207743 | 9 | |
| lung | 6 / 336974 | 17 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 8 / 91610 | 87 |  |
| mammary gland | 0 / 153271 | 0 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 1 / 214812 | 4 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 1 / 16585 | 60 | |
| placenta | 0 / 280825 | 0 | |
| prostate | 0 / 189345 | 0 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 13 / 210574 | 61 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 1 / 330442 | 3 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 2 / 52413 | 38 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 1 / 232878 | 4 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_12955_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 7.4 ± 0.71 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 7.23 ± 0.57 | |
| Basal Part of Pons | 6.79 ± 0.5 | |
| Cerebellar Cortex | 6.01 ± 0.2 | |
| Cerebellar Nuclei | 5.58 ± 0.67 | |
| Claustrum | 6.48 ± 0.71 | |
| Epithalamus | 6.57 ± 0.94 | |
| Frontal Lobe | 6.64 ± 0.57 | |
| Globus Pallidus | 5.35 ± 1.21 | |
| Hypothalamus | 6.08 ± 0.69 | |
| Insula | 6.78 ± 0.28 | |
| Limbic Lobe | 7.05 ± 0.63 | |
| Mesencephalon | 6.35 ± 0.63 | |
| Myelencephalon | 6.55 ± 0.69 | |
| Occipital Lobe | 6.79 ± 0.39 | |
| Parietal Lobe | 6.75 ± 0.51 | |
| Pontine Tegmentum | 6.65 ± 0.8 | |
| Striatum | 8.34 ± 0.54 | |
| Subthalamus | 6.57 ± 0.65 | |
| Temporal Lobe | 6.81 ± 0.38 | |
| Thalamus | 5.85 ± 0.56 | |
| White Matter | 5.13 ± 1.15 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Phactr1 | CB | Cerebellum | 15.47 | |
| 17.22 | | |||
| Phactr1 | CTX | Cerebral cortex | 100 | |
| 100 | | |||
| Phactr1 | HIP | Hippocampal region | 82.99 | |
| 100 | | |||
| Phactr1 | HPF | Hippocampal formation | 97.04 | |
| 100 | | |||
| Phactr1 | HY | Hypothalamus | 21.88 | |
| 18.15 | | |||
| Phactr1 | LSX | Lateral septal complex | 100 | |
| 100 | | |||
| Phactr1 | MB | Midbrain | 15.62 | |
| 15.25 | | |||
| Phactr1 | MY | Medulla | 32.73 | |
| 38.23 | | |||
| Phactr1 | OLF | Olfactory bulb | 93.03 | |
| 98.07 | | |||
| Phactr1 | P | Pons | 20.02 | |
| 21.42 | | |||
| Phactr1 | PAL | Pallidum | 44.08 | |
| 54.47 | | |||
| Phactr1 | RHP | Retrohippocampal region | 100 | |
| 100 | | |||
| Phactr1 | sAMY | Striatum-like amygdalar nuclei | 73.84 | |
| 71.03 | | |||
| Phactr1 | STR | Striatum | 100 | |
| 100 | | |||
| Phactr1 | STRd | Striatum dorsal region | 100 | |
| 100 | | |||
| Phactr1 | STRv | Striatum ventral region | 100 | |
| 100 | | |||
| Phactr1 | TH | Thalamus | 13.48 | |
| 14.46 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00080703 | 20 | 251 | 270 | VPCSTSYHSSGLHSGDGVTK | Peptide Atlas |