Annotation Detail for SCUBE3
Basic Information Top
| Gene Symbol: | SCUBE3 ( CEGF3,DKFZp686B09105,DKFZp686B1223,DKFZp686D20108,FLJ34743 ) |
|---|---|
| Gene Full Name: | signal peptide, CUB domain, EGF-like 3 |
| Band: | 6p21.3 |
| Quick Links | Entrez ID:222663; OMIM: NA; Uniprot ID:SCUB3_HUMAN; ENSEMBL ID: ENSG00000146197; HGNC ID: 13655 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.12923
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 8 / 70761 | 113 |  |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 3 / 564012 | 5 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 34 / 1939121 | 17 |  |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 1 / 94178 | 10 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 3 / 82823 | 36 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 5 / 263845 | 18 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 2 / 136302 | 14 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 9 / 97250 | 92 | |
| normal | 66 / 3360307 | 19 | |
| ovarian tumor | 7 / 76682 | 91 | |
| pancreatic tumor | 3 / 104616 | 28 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 2 / 124949 | 16 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 1 / 90257 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 4 / 71655 | 55 | |
| bone marrow | 1 / 48801 | 20 | |
| brain | 4 / 1100989 | 3 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 11 / 149255 | 73 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 10 / 215722 | 46 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 6 / 211054 | 28 | |
| heart | 0 / 89626 | 0 | |
| intestine | 1 / 234472 | 4 | |
| kidney | 12 / 211777 | 56 | |
| larynx | 0 / 24145 | 0 | |
| liver | 3 / 207743 | 14 | |
| lung | 25 / 336974 | 74 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 3 / 153271 | 19 | |
| mouth | 1 / 67052 | 14 | |
| muscle | 2 / 107715 | 18 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 7 / 102051 | 68 | |
| pancreas | 3 / 214812 | 13 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 2 / 280825 | 7 | |
| prostate | 2 / 189345 | 10 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 6 / 210574 | 28 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 2 / 96619 | 20 | |
| testis | 9 / 330442 | 27 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 5 / 47473 | 105 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 1 / 232878 | 4 | |
| vascular | 2 / 51780 | 38 | |
Microarray in - Probe name: CUST_11034_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 2.02 ± 1 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 1.44 ± 0.19 | |
| Basal Part of Pons | 1.18 ± 0.38 | |
| Cerebellar Cortex | 1.41 ± 0.76 | |
| Cerebellar Nuclei | 1.8 ± 0.76 | |
| Claustrum | 2.42 ± 0.85 | |
| Epithalamus | 1.39 ± 0.72 | |
| Frontal Lobe | 1.46 ± 0.65 | |
| Globus Pallidus | 2 ± 0.33 | |
| Hypothalamus | 1.58 ± 0.72 | |
| Insula | 1.26 ± 0.49 | |
| Limbic Lobe | 1.5 ± 0.56 | |
| Mesencephalon | 1.72 ± 0.66 | |
| Myelencephalon | 1.65 ± 0.65 | |
| Occipital Lobe | 1.51 ± 0.65 | |
| Parietal Lobe | 1.52 ± 0.68 | |
| Pontine Tegmentum | 1.59 ± 0.64 | |
| Striatum | 1.81 ± 0.61 | |
| Subthalamus | 1.64 ± 0.62 | |
| Temporal Lobe | 1.52 ± 0.68 | |
| Thalamus | 1.71 ± 0.61 | |
| White Matter | 1.91 ± 0.21 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Scube3 | CB | Cerebellum | 1.32 | |
| 1.9 | | |||
| Scube3 | CTX | Cerebral cortex | 0.72 | |
| 0.7 | | |||
| Scube3 | HIP | Hippocampal region | 1.19 | |
| 1.34 | | |||
| Scube3 | HPF | Hippocampal formation | 1.05 | |
| 1.06 | | |||
| Scube3 | HY | Hypothalamus | 0.2 | |
| 0.23 | | |||
| Scube3 | LSX | Lateral septal complex | 0.26 | |
| 0.4 | | |||
| Scube3 | MB | Midbrain | 0.41 | |
| 0.73 | | |||
| Scube3 | MY | Medulla | 2.13 | |
| 3.16 | | |||
| Scube3 | OLF | Olfactory bulb | 3.02 | |
| 2.4 | | |||
| Scube3 | P | Pons | 0.37 | |
| 0.65 | | |||
| Scube3 | PAL | Pallidum | 0.86 | |
| 0.69 | | |||
| Scube3 | RHP | Retrohippocampal region | 0.83 | |
| 0.67 | | |||
| Scube3 | sAMY | Striatum-like amygdalar nuclei | 0.68 | |
| 0.51 | | |||
| Scube3 | STR | Striatum | 5.28 | |
| 3.28 | | |||
| Scube3 | STRd | Striatum dorsal region | 5.61 | |
| 3.49 | | |||
| Scube3 | STRv | Striatum ventral region | 9.96 | |
| 5.71 | | |||
| Scube3 | TH | Thalamus | 1.05 | |
| 1.24 | |