Annotation Detail for SLC29A4
Basic Information Top
| Gene Symbol: | SLC29A4 ( ENT4,FLJ34923,PMAT ) |
|---|---|
| Gene Full Name: | solute carrier family 29 (nucleoside transporters), member 4 |
| Band: | 7p22.1 |
| Quick Links | Entrez ID:222962; OMIM: 609149; Uniprot ID:S29A4_HUMAN; ENSEMBL ID: ENSG00000164638; HGNC ID: 23097 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.4302
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 2 / 70761 | 28 |  |
| blastocyst | 2 / 62319 | 32 | |
| fetus | 15 / 564012 | 26 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 3 / 55556 | 53 |  |
| adult | 27 / 1939121 | 13 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 1 / 114246 | 8 |  |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 2 / 119369 | 16 | |
| germ cell tumor | 8 / 263845 | 30 | |
| glioma | 5 / 106883 | 46 | |
| head and neck tumor | 3 / 136302 | 22 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 7 / 96359 | 72 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 57 / 3360307 | 16 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 2 / 104616 | 19 | |
| primitive neuroectodermal tumor of the CNS | 25 / 125680 | 198 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 4 / 46356 | 86 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 1 / 125191 | 7 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 2 / 40015 | 49 | |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 31 / 1100989 | 28 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 5 / 215722 | 23 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 10 / 211054 | 47 | |
| heart | 0 / 89626 | 0 | |
| intestine | 3 / 234472 | 12 | |
| kidney | 2 / 211777 | 9 | |
| larynx | 0 / 24145 | 0 | |
| liver | 8 / 207743 | 38 | |
| lung | 1 / 336974 | 2 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 2 / 153271 | 13 | |
| mouth | 1 / 67052 | 14 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 5 / 214812 | 23 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 1 / 280825 | 3 | |
| prostate | 2 / 189345 | 10 | |
| salivary gland | 2 / 20155 | 99 | |
| skin | 0 / 210574 | 0 | |
| spleen | 1 / 53952 | 18 | |
| stomach | 0 / 96619 | 0 | |
| testis | 8 / 330442 | 24 | |
| thymus | 1 / 81131 | 12 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 1 / 232878 | 4 | |
| vascular | 1 / 51780 | 19 | |
Microarray in - Probe name: CUST_3189_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 2.71 ± 0.95 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 2.44 ± 0.42 | |
| Basal Part of Pons | 2.13 ± 0.42 | |
| Cerebellar Cortex | 2.43 ± 0.77 | |
| Cerebellar Nuclei | 2.6 ± 0.56 | |
| Claustrum | 2.32 ± 0.68 | |
| Epithalamus | 2.5 ± 0.73 | |
| Frontal Lobe | 2.64 ± 0.76 | |
| Globus Pallidus | 2.78 ± 0.71 | |
| Hypothalamus | 2.59 ± 0.72 | |
| Insula | 3.08 ± 0.48 | |
| Limbic Lobe | 2.69 ± 0.85 | |
| Mesencephalon | 2.73 ± 0.73 | |
| Myelencephalon | 2.58 ± 0.66 | |
| Occipital Lobe | 2.66 ± 0.64 | |
| Parietal Lobe | 2.65 ± 0.71 | |
| Pontine Tegmentum | 2.79 ± 0.69 | |
| Striatum | 1.79 ± 0.96 | |
| Subthalamus | 2.77 ± 1.05 | |
| Temporal Lobe | 2.91 ± 0.7 | |
| Thalamus | 2.7 ± 0.65 | |
| White Matter | 1.82 ± 0.29 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Slc29a4 | CB | Cerebellum | 33.95 | |
| 48.18 | | |||
| Slc29a4 | CTX | Cerebral cortex | 13.25 | |
| 12.09 | | |||
| Slc29a4 | HIP | Hippocampal region | 65.36 | |
| 100 | | |||
| Slc29a4 | HPF | Hippocampal formation | 42.67 | |
| 59.26 | | |||
| Slc29a4 | HY | Hypothalamus | 7.13 | |
| 6.48 | | |||
| Slc29a4 | LSX | Lateral septal complex | 0.44 | |
| 1.14 | | |||
| Slc29a4 | MB | Midbrain | 15.42 | |
| 17.11 | | |||
| Slc29a4 | MY | Medulla | 34.43 | |
| 46.21 | | |||
| Slc29a4 | OLF | Olfactory bulb | 26.19 | |
| 24.94 | | |||
| Slc29a4 | P | Pons | 15.76 | |
| 23.28 | | |||
| Slc29a4 | PAL | Pallidum | 13.08 | |
| 13.98 | | |||
| Slc29a4 | RHP | Retrohippocampal region | 6.38 | |
| 4.93 | | |||
| Slc29a4 | sAMY | Striatum-like amygdalar nuclei | 9.25 | |
| 10.34 | | |||
| Slc29a4 | STR | Striatum | 5.77 | |
| 6.96 | | |||
| Slc29a4 | STRd | Striatum dorsal region | 4.43 | |
| 6.1 | | |||
| Slc29a4 | STRv | Striatum ventral region | 7.08 | |
| 5.35 | | |||
| Slc29a4 | TH | Thalamus | 15.75 | |
| 16.45 | |