AutismKB 2.0

Annotation Detail for FGF9


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Basic Information Top
Gene Symbol:FGF9 ( GAF,HBFG-9,MGC119914,MGC119915,SYNS3 )
Gene Full Name: fibroblast growth factor 9 (glia-activating factor)
Band: 13q12.11
Quick LinksEntrez ID:2254; OMIM: 600921; Uniprot ID:FGF9_HUMAN; ENSEMBL ID: ENSG00000102678; HGNC ID: 3687
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body1 / 7076114
blastocyst1 / 6231916
fetus14 / 56401224
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult4 / 19391212
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor0 / 2638450 
glioma0 / 1068830 
head and neck tumor3 / 13630222
kidney tumor0 / 689590 
leukemia4 / 9584241
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia1 / 9725010
normal39 / 336030711
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor1 / 9025711
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood4 / 12347832
bone0 / 716550 
bone marrow0 / 488010 
brain17 / 110098915
cervix0 / 481710 
connective tissue1 / 1492556
ear0 / 162120 
embryonic tissue2 / 2157229
esophagus0 / 202090 
eye5 / 21105423
heart1 / 8962611
intestine1 / 2344724
kidney11 / 21177751
larynx0 / 241450 
liver0 / 2077430 
lung2 / 3369745
lymph0 / 442700 
lymph node0 / 916100 
mammary gland0 / 1532710 
mouth0 / 670520 
muscle0 / 1077150 
nerve0 / 157680 
ovary0 / 1020510 
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta0 / 2808250 
prostate0 / 1893450 
salivary gland0 / 201550 
skin0 / 2105740 
spleen0 / 539520 
stomach0 / 966190 
testis2 / 3304426
thymus0 / 811310 
thyroid3 / 4747363
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus1 / 2328784
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 206404_at
Cell line Expression level Expression bar
721_B_lymphoblasts5.4
Adipocyte4.25
AdrenalCortex32.2
Adrenalgland3.95
Amygdala8.75
Appendix4.45
AtrioventricularNode3.35
BDCA4+_DentriticCells4.85
Bonemarrow4.25
BronchialEpithelialCells4.15
CD105+_Endothelial4.35
CD14+_Monocytes4.65
CD19+_BCells(neg._sel.)4.7
CD33+_Myeloid5.55
CD34+5.5
CD4+_Tcells4.75
CD56+_NKCells5.05
CD71+_EarlyErythroid4.15
CD8+_Tcells4.25
CardiacMyocytes5.55
Caudatenucleus3.9
Cerebellum19.55
CerebellumPeduncles67.5
CiliaryGanglion3.15
CingulateCortex13.3
Colorectaladenocarcinoma4.95
DorsalRootGanglion3.45
FetalThyroid4.3
Fetalbrain44.65
Fetalliver3.75
Fetallung3.65
GlobusPallidus5.2
Heart5.95
Hypothalamus8.65
Kidney5.1
Leukemia_chronicMyelogenousK-5623.85
Leukemia_promyelocytic-HL-603.8
Leukemialymphoblastic(MOLT-4)3.5
Liver5.8
Lung4.85
Lymphnode3.6
Lymphoma_burkitts(Daudi)5.55
Lymphoma_burkitts(Raji)6.15
MedullaOblongata9.3
OccipitalLobe11.85
OlfactoryBulb3.35
Ovary2.9
Pancreas3.45
PancreaticIslet4.65
ParietalLobe7.7
Pituitary5.15
Placenta4.3
Pons4.3
PrefrontalCortex43.75
Prostate5.1
Salivarygland3.45
SkeletalMuscle4.95
Skin3.35
SmoothMuscle4.85
Spinalcord4.6
SubthalamicNucleus5.55
SuperiorCervicalGanglion5.05
TemporalLobe7.95
Testis3.7
TestisGermCell3.65
TestisIntersitial3.65
TestisLeydigCell4.3
TestisSeminiferousTubule3.7
Thalamus8.65
Thymus3.35
Thyroid5.5
Tongue4.35
Tonsil4.25
Trachea3.55
TrigeminalGanglion4.85
Uterus3.6
UterusCorpus3.9
WholeBlood4.7
Wholebrain33.65
colon4.4
pineal_day5.3
pineal_night5.2
retina5.275
small_intestine4.15
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_7610_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala3.97 ± 0.85
Basal Forebrain3.17 ± 0.44
Basal Part of Pons4.98 ± 0.29
Cerebellar Cortex4.91 ± 0.35
Cerebellar Nuclei5.73 ± 0.54
Claustrum3.58 ± 0.73
Epithalamus2.85 ± 0.77
Frontal Lobe4.1 ± 0.94
Globus Pallidus3.5 ± 0.8
Hypothalamus3.47 ± 0.51
Insula3.56 ± 0.76
Limbic Lobe3.9 ± 0.74
Mesencephalon3.73 ± 0.92
Myelencephalon3.94 ± 0.94
Occipital Lobe4.8 ± 0.62
Parietal Lobe4.41 ± 0.72
Pontine Tegmentum4.19 ± 0.69
Striatum2.8 ± 0.78
Subthalamus5.06 ± 0.45
Temporal Lobe3.81 ± 0.79
Thalamus4.12 ± 1.01
White Matter2.06 ± 0.57
Mouse Brain ISH
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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