AutismKB 2.0

Annotation Detail for FGF13


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Basic Information Top
Gene Symbol:FGF13 ( FGF2,FHF-2,FHF2 )
Gene Full Name: fibroblast growth factor 13
Band: Xq26.3-q27.1
Quick LinksEntrez ID:2258; OMIM: 300070; Uniprot ID:FGF13_HUMAN; ENSEMBL ID: ENSG00000129682; HGNC ID: 3670
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body6 / 7076184
blastocyst0 / 623190 
fetus28 / 56401249
neonate0 / 310970 
infant2 / 2362084
juvenile1 / 5555617
adult22 / 193912111
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma1 / 8282312
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor11 / 26384541
glioma0 / 1068830 
head and neck tumor2 / 13630214
kidney tumor4 / 6895958
leukemia0 / 958420 
liver tumor1 / 9635910
lung tumor1 / 1031279
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal123 / 336030736
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS9 / 12568071
prostate cancer4 / 10268038
retinoblastoma0 / 463560 
skin tumor10 / 12494980
soft tissue/muscle tissue tumor1 / 1251917
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone1 / 7165513
bone marrow0 / 488010 
brain99 / 110098989
cervix0 / 481710 
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue13 / 21572260
esophagus0 / 202090 
eye3 / 21105414
heart1 / 8962611
intestine1 / 2344724
kidney12 / 21177756
larynx0 / 241450 
liver1 / 2077434
lung6 / 33697417
lymph0 / 442700 
lymph node0 / 916100 
mammary gland3 / 15327119
mouth2 / 6705229
muscle2 / 10771518
nerve0 / 157680 
ovary1 / 1020519
pancreas1 / 2148124
parathyroid1 / 2053948
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta4 / 28082514
prostate4 / 18934521
salivary gland2 / 2015599
skin10 / 21057447
spleen1 / 5395218
stomach0 / 966190 
testis4 / 33044212
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea1 / 5241319
umbilical cord0 / 136800 
uterus3 / 23287812
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 205110_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts11.35
Adipocyte16.05
AdrenalCortex17
Adrenalgland10.45
Amygdala366.5
Appendix16.35
AtrioventricularNode18.95
BDCA4+_DentriticCells10.6
Bonemarrow18.25
BronchialEpithelialCells11.45
CD105+_Endothelial12.7
CD14+_Monocytes10.55
CD19+_BCells(neg._sel.)11.1
CD33+_Myeloid15.3
CD34+14.65
CD4+_Tcells9.6
CD56+_NKCells11.05
CD71+_EarlyErythroid10.05
CD8+_Tcells8.75
CardiacMyocytes21.3
Caudatenucleus97.2
Cerebellum9.55
CerebellumPeduncles14.15
CiliaryGanglion63.2
CingulateCortex59.4
Colorectaladenocarcinoma17.1
DorsalRootGanglion94.9
FetalThyroid14.05
Fetalbrain424.05
Fetalliver10.15
Fetallung12.65
GlobusPallidus52.15
Heart22.7
Hypothalamus130.3
Kidney11.3
Leukemia_chronicMyelogenousK-56286.35
Leukemia_promyelocytic-HL-609.85
Leukemialymphoblastic(MOLT-4)9.45
Liver17.55
Lung15.9
Lymphnode13.45
Lymphoma_burkitts(Daudi)15.2
Lymphoma_burkitts(Raji)18.5
MedullaOblongata67.2
OccipitalLobe92.4
OlfactoryBulb17.05
Ovary10.85
Pancreas10.45
PancreaticIslet14.3
ParietalLobe44.3
Pituitary19.4
Placenta16.25
Pons45.2
PrefrontalCortex152.35
Prostate61.4
Salivarygland13.45
SkeletalMuscle21.25
Skin15.95
SmoothMuscle12.4
Spinalcord23.15
SubthalamicNucleus46.3
SuperiorCervicalGanglion28.05
TemporalLobe63.05
Testis18.85
TestisGermCell11.05
TestisIntersitial11.05
TestisLeydigCell16.55
TestisSeminiferousTubule12.6
Thalamus48.2
Thymus8.85
Thyroid20.8
Tongue17.05
Tonsil15.35
Trachea13.55
TrigeminalGanglion45.8
Uterus53.1
UterusCorpus15.35
WholeBlood11.9
Wholebrain179.45
colon16.75
pineal_day199.2
pineal_night253.24
retina59.7
small_intestine23.65
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_24_P85009
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala7.18 ± 0.66
Basal Forebrain6.86 ± 0.48
Basal Part of Pons4.58 ± 0.32
Cerebellar Cortex6.02 ± 0.5
Cerebellar Nuclei5.47 ± 0.68
Claustrum6.63 ± 0.54
Epithalamus6.48 ± 0.92
Frontal Lobe6.49 ± 0.89
Globus Pallidus3.84 ± 2.12
Hypothalamus7.28 ± 0.99
Insula6.7 ± 1.09
Limbic Lobe6.14 ± 0.88
Mesencephalon6.57 ± 1.01
Myelencephalon6.9 ± 1.3
Occipital Lobe8.12 ± 0.95
Parietal Lobe7.22 ± 0.73
Pontine Tegmentum7.39 ± 0.92
Striatum7.37 ± 1.13
Subthalamus4.19 ± 0.27
Temporal Lobe6.88 ± 0.79
Thalamus8.45 ± 0.75
White Matter3.22 ± 1.09
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Fgf13CBCerebellum18.35
21.66
Fgf13CTXCerebral cortex36.05
26.58
Fgf13HIPHippocampal region64.05
83.56
Fgf13HPFHippocampal formation58.9
63.45
Fgf13HYHypothalamus16.11
11.15
Fgf13LSXLateral septal complex11.46
7.89
Fgf13MBMidbrain28.81
26.46
Fgf13MYMedulla27.4
30.56
Fgf13OLFOlfactory bulb44.43
31.06
Fgf13PPons14.23
14.38
Fgf13PALPallidum12.39
10.25
Fgf13RHPRetrohippocampal region53.59
40.25
Fgf13sAMYStriatum-like amygdalar nuclei22.65
14.87
Fgf13STRStriatum13.16
8.31
Fgf13STRdStriatum dorsal region11.94
7.63
Fgf13STRvStriatum ventral region9.46
5.2
Fgf13THThalamus43.89
39.43
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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