Annotation Detail for FHIT
Basic Information Top
| Gene Symbol: | FHIT ( AP3Aase,FRA3B ) |
|---|---|
| Gene Full Name: | fragile histidine triad gene |
| Band: | 3p14.2 |
| Quick Links | Entrez ID:2272; OMIM: 601153; Uniprot ID:FHIT_HUMAN; ENSEMBL ID: ENSG00000189283; HGNC ID: 3701 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.655995
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 23 / 564012 | 40 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 48 / 1939121 | 24 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 8 / 94178 | 84 |  |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 7 / 119369 | 58 | |
| germ cell tumor | 5 / 263845 | 18 | |
| glioma | 2 / 106883 | 18 | |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 3 / 68959 | 43 | |
| leukemia | 1 / 95842 | 10 |  |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 2 / 71755 | 27 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 63 / 3360307 | 18 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 1 / 104616 | 9 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 13 / 125191 | 103 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 2 / 123478 | 16 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 16 / 1100989 | 14 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 13 / 149255 | 87 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 0 / 215722 | 0 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 7 / 211054 | 33 | |
| heart | 0 / 89626 | 0 | |
| intestine | 1 / 234472 | 4 | |
| kidney | 6 / 211777 | 28 | |
| larynx | 0 / 24145 | 0 | |
| liver | 1 / 207743 | 4 | |
| lung | 2 / 336974 | 5 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 1 / 91610 | 10 | |
| mammary gland | 15 / 153271 | 97 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 1 / 107715 | 9 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 1 / 214812 | 4 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 2 / 280825 | 7 | |
| prostate | 0 / 189345 | 0 | |
| salivary gland | 1 / 20155 | 49 | |
| skin | 1 / 210574 | 4 | |
| spleen | 3 / 53952 | 55 | |
| stomach | 7 / 96619 | 72 | |
| testis | 4 / 330442 | 12 | |
| thymus | 4 / 81131 | 49 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 1 / 52413 | 19 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 2 / 232878 | 8 | |
| vascular | 0 / 51780 | 0 |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 206492_at
| Cell line | Expression level | Expression bar |
|---|---|---|
| ||
| 721_B_lymphoblasts | 4.55 | |
| Adipocyte | 3.65 | |
| AdrenalCortex | 3.85 | |
| Adrenalgland | 3.15 | |
| Amygdala | 3.95 | |
| Appendix | 3.65 | |
| AtrioventricularNode | 2.85 | |
| BDCA4+_DentriticCells | 4.05 | |
| Bonemarrow | 3.65 | |
| BronchialEpithelialCells | 3.65 | |
| CD105+_Endothelial | 3.85 | |
| CD14+_Monocytes | 3.9 | |
| CD19+_BCells(neg._sel.) | 3.9 | |
| CD33+_Myeloid | 4.7 | |
| CD34+ | 7.55 | |
| CD4+_Tcells | 26.45 | |
| CD56+_NKCells | 4.35 | |
| CD71+_EarlyErythroid | 3.4 | |
| CD8+_Tcells | 3.65 | |
| CardiacMyocytes | 4.75 | |
| Caudatenucleus | 3.25 | |
| Cerebellum | 3 | |
| CerebellumPeduncles | 4.2 | |
| CiliaryGanglion | 3.35 | |
| CingulateCortex | 3.9 | |
| Colorectaladenocarcinoma | 3.65 | |
| DorsalRootGanglion | 2.8 | |
| FetalThyroid | 3.55 | |
| Fetalbrain | 3.6 | |
| Fetalliver | 3.2 | |
| Fetallung | 3 | |
| GlobusPallidus | 2.7 | |
| Heart | 6.1 | |
| Hypothalamus | 4.75 | |
| Kidney | 3.15 | |
| Leukemia_chronicMyelogenousK-562 | 3.4 | |
| Leukemia_promyelocytic-HL-60 | 3.25 | |
| Leukemialymphoblastic(MOLT-4) | 2.95 | |
| Liver | 4.9 | |
| Lung | 4 | |
| Lymphnode | 3.25 | |
| Lymphoma_burkitts(Daudi) | 4.7 | |
| Lymphoma_burkitts(Raji) | 5.2 | |
| MedullaOblongata | 3.4 | |
| OccipitalLobe | 3.3 | |
| OlfactoryBulb | 2.85 | |
| Ovary | 2.4 | |
| Pancreas | 2.95 | |
| PancreaticIslet | 3.9 | |
| ParietalLobe | 3.85 | |
| Pituitary | 4.3 | |
| Placenta | 3.8 | |
| Pons | 3.5 | |
| PrefrontalCortex | 4.65 | |
| Prostate | 4.3 | |
| Salivarygland | 2.9 | |
| SkeletalMuscle | 4.3 | |
| Skin | 2.85 | |
| SmoothMuscle | 4.2 | |
| Spinalcord | 3.95 | |
| SubthalamicNucleus | 3.35 | |
| SuperiorCervicalGanglion | 4.2 | |
| TemporalLobe | 3.35 | |
| Testis | 3.2 | |
| TestisGermCell | 3.1 | |
| TestisIntersitial | 3.05 | |
| TestisLeydigCell | 3.65 | |
| TestisSeminiferousTubule | 3.1 | |
| Thalamus | 3.8 | |
| Thymus | 3.9 | |
| Thyroid | 4.65 | |
| Tongue | 3.6 | |
| Tonsil | 3.55 | |
| Trachea | 3.1 | |
| TrigeminalGanglion | 3.7 | |
| Uterus | 2.95 | |
| UterusCorpus | 3.3 | |
| WholeBlood | 4.05 | |
| Wholebrain | 3.85 | |
| colon | 3.7 | |
| pineal_day | 4.64 | |
| pineal_night | 4.5 | |
| retina | 4.55 | |
| small_intestine | 3.5 | |
- Probe name: A_24_P938313
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 13.6 ± 0.67 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 13.38 ± 0.32 | |
| Basal Part of Pons | 13.55 ± 0.35 | |
| Cerebellar Cortex | 13 ± 0.42 | |
| Cerebellar Nuclei | 13.53 ± 0.36 | |
| Claustrum | 13.63 ± 0.38 | |
| Epithalamus | 12.82 ± 0.33 | |
| Frontal Lobe | 13.47 ± 0.54 | |
| Globus Pallidus | 13.75 ± 0.25 | |
| Hypothalamus | 13.34 ± 0.54 | |
| Insula | 13.37 ± 0.69 | |
| Limbic Lobe | 13.42 ± 0.52 | |
| Mesencephalon | 13.49 ± 0.49 | |
| Myelencephalon | 13.38 ± 0.58 | |
| Occipital Lobe | 13.27 ± 0.48 | |
| Parietal Lobe | 13.28 ± 0.47 | |
| Pontine Tegmentum | 13.23 ± 0.51 | |
| Striatum | 13.59 ± 0.55 | |
| Subthalamus | 13.33 ± 0.2 | |
| Temporal Lobe | 13.33 ± 0.56 | |
| Thalamus | 13.42 ± 0.39 | |
| White Matter | 13.71 ± 0.81 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Fhit | CB | Cerebellum | 1.94 | |
| 2.7 | | |||
| Fhit | CTX | Cerebral cortex | 1.27 | |
| 1.79 | | |||
| Fhit | HIP | Hippocampal region | 0.26 | |
| 0.61 | | |||
| Fhit | HPF | Hippocampal formation | 0.29 | |
| 0.51 | | |||
| Fhit | HY | Hypothalamus | 0.14 | |
| 0.15 | | |||
| Fhit | LSX | Lateral septal complex | 0.31 | |
| 0.26 | | |||
| Fhit | MB | Midbrain | 0.86 | |
| 1.17 | | |||
| Fhit | MY | Medulla | 4.44 | |
| 5.13 | | |||
| Fhit | OLF | Olfactory bulb | 1.37 | |
| 2.23 | | |||
| Fhit | P | Pons | 0.54 | |
| 0.56 | | |||
| Fhit | PAL | Pallidum | 0.24 | |
| 0.9 | | |||
| Fhit | RHP | Retrohippocampal region | 0.36 | |
| 0.37 | | |||
| Fhit | sAMY | Striatum-like amygdalar nuclei | 0.33 | |
| 0.17 | | |||
| Fhit | STR | Striatum | 0.49 | |
| 0.54 | | |||
| Fhit | STRd | Striatum dorsal region | 0.55 | |
| 0.77 | | |||
| Fhit | STRv | Striatum ventral region | 0.4 | |
| 0.21 | | |||
| Fhit | TH | Thalamus | 0.21 | |
| 0.27 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00072022 | 18 | 29 | 46 | KPVVPGHVLVCPLRPVER | Peptide Atlas |