Annotation Detail for ITGA11
Basic Information Top
| Gene Symbol: | ITGA11 ( HsT18964 ) |
|---|---|
| Gene Full Name: | integrin, alpha 11 |
| Band: | 15q23 |
| Quick Links | Entrez ID:22801; OMIM: 604789; Uniprot ID:ITA11_HUMAN; ENSEMBL ID: ENSG00000137809; HGNC ID: 6136 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.436416
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 10 / 70761 | 141 |  |
| blastocyst | 2 / 62319 | 32 |  |
| fetus | 2 / 564012 | 3 |  |
| neonate | 1 / 31097 | 32 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 45 / 1939121 | 23 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 1 / 17475 | 57 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 6 / 82823 | 72 | |
| colorectal tumor | 5 / 114246 | 43 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 3 / 263845 | 11 | |
| glioma | 2 / 106883 | 18 | |
| head and neck tumor | 7 / 136302 | 51 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 2 / 96359 | 20 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 1 / 97250 | 10 | |
| normal | 66 / 3360307 | 19 | |
| ovarian tumor | 1 / 76682 | 13 | |
| pancreatic tumor | 2 / 104616 | 19 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 2 / 125191 | 15 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 1 / 29757 | 33 | |
| blood | 0 / 123478 | 0 | |
| bone | 22 / 71655 | 307 |  |
| bone marrow | 3 / 48801 | 61 | |
| brain | 13 / 1100989 | 11 | |
| cervix | 1 / 48171 | 20 | |
| connective tissue | 9 / 149255 | 60 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 12 / 215722 | 55 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 1 / 211054 | 4 | |
| heart | 0 / 89626 | 0 | |
| intestine | 6 / 234472 | 25 | |
| kidney | 5 / 211777 | 23 | |
| larynx | 0 / 24145 | 0 | |
| liver | 4 / 207743 | 19 | |
| lung | 0 / 336974 | 0 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 5 / 153271 | 32 | |
| mouth | 1 / 67052 | 14 | |
| muscle | 2 / 107715 | 18 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 1 / 102051 | 9 | |
| pancreas | 2 / 214812 | 9 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 1 / 280825 | 3 | |
| prostate | 0 / 189345 | 0 | |
| salivary gland | 4 / 20155 | 198 | |
| skin | 4 / 210574 | 18 | |
| spleen | 1 / 53952 | 18 | |
| stomach | 0 / 96619 | 0 | |
| testis | 3 / 330442 | 9 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 2 / 47473 | 42 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 1 / 52413 | 19 | |
| umbilical cord | 1 / 13680 | 73 | |
| uterus | 3 / 232878 | 12 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_15620_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 2.68 ± 1.19 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 2.1 ± 0.22 | |
| Basal Part of Pons | 1.89 ± 0.53 | |
| Cerebellar Cortex | 2 ± 0.83 | |
| Cerebellar Nuclei | 2.44 ± 0.71 | |
| Claustrum | 3.54 ± 0.69 | |
| Epithalamus | 2.23 ± 0.85 | |
| Frontal Lobe | 2.23 ± 0.87 | |
| Globus Pallidus | 2.28 ± 0.63 | |
| Hypothalamus | 2.34 ± 0.81 | |
| Insula | 2.47 ± 0.68 | |
| Limbic Lobe | 2.09 ± 0.84 | |
| Mesencephalon | 2.51 ± 0.91 | |
| Myelencephalon | 2.3 ± 0.83 | |
| Occipital Lobe | 3.04 ± 1.12 | |
| Parietal Lobe | 2.39 ± 0.89 | |
| Pontine Tegmentum | 2.27 ± 0.77 | |
| Striatum | 1.95 ± 0.82 | |
| Subthalamus | 2.34 ± 0.87 | |
| Temporal Lobe | 2.09 ± 0.81 | |
| Thalamus | 2.15 ± 0.73 | |
| White Matter | 2 ± 0.4 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Itga11 | CB | Cerebellum | 0.36 | |
| 0.7 | | |||
| Itga11 | CTX | Cerebral cortex | 0.37 | |
| 0.4 | | |||
| Itga11 | HIP | Hippocampal region | 0.34 | |
| 0.43 | | |||
| Itga11 | HPF | Hippocampal formation | 0.44 | |
| 0.48 | | |||
| Itga11 | HY | Hypothalamus | 0.22 | |
| 0.26 | | |||
| Itga11 | LSX | Lateral septal complex | 0.3 | |
| 0.27 | | |||
| Itga11 | MB | Midbrain | 0.45 | |
| 0.46 | | |||
| Itga11 | MY | Medulla | 0.54 | |
| 0.41 | | |||
| Itga11 | OLF | Olfactory bulb | 0.7 | |
| 1.31 | | |||
| Itga11 | P | Pons | 0.3 | |
| 0.2 | | |||
| Itga11 | PAL | Pallidum | 0.15 | |
| 0.2 | | |||
| Itga11 | RHP | Retrohippocampal region | 0.52 | |
| 0.47 | | |||
| Itga11 | sAMY | Striatum-like amygdalar nuclei | 0.32 | |
| 0.18 | | |||
| Itga11 | STR | Striatum | 0.25 | |
| 0.2 | | |||
| Itga11 | STRd | Striatum dorsal region | 0.17 | |
| 0.17 | | |||
| Itga11 | STRv | Striatum ventral region | 0.41 | |
| 0.26 | | |||
| Itga11 | TH | Thalamus | 0.27 | |
| 0.34 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| ITA11_HUMAN_718 | 13 | 718 | 730 | AVLLSSGQELCER | PRIDE |
| ITA11_HUMAN_837 | 10 | 837 | 846 | VAVEATLENR | PRIDE |