AutismKB 2.0

Annotation Detail for COPG


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Basic Information Top
Gene Symbol:COPG ( COPG1,FLJ21068 )
Gene Full Name: coatomer protein complex, subunit gamma
Band: 3q21.3
Quick LinksEntrez ID:22820; OMIM: NA; Uniprot ID:COPG_HUMAN; ENSEMBL ID: ENSG00000181789; HGNC ID:
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body9 / 70761127
blastocyst5 / 6231980
fetus63 / 564012111
neonate14 / 31097450
infant3 / 23620127
juvenile5 / 5555689
adult258 / 1939121133
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor2 / 12794156
bladder carcinoma0 / 174750 
breast (mammary gland) tumor29 / 94178307
cervical tumor5 / 34366145
chondrosarcoma16 / 82823193
colorectal tumor16 / 114246140
esophageal tumor3 / 17290173
gastrointestinal tumor31 / 119369259
germ cell tumor50 / 263845189
glioma12 / 106883112
head and neck tumor51 / 136302374
kidney tumor7 / 68959101
leukemia7 / 9584273
liver tumor14 / 96359145
lung tumor10 / 10312796
lymphoma16 / 71755222
non-neoplasia13 / 97250133
normal372 / 3360307110
ovarian tumor12 / 76682156
pancreatic tumor10 / 10461695
primitive neuroectodermal tumor of the CNS22 / 125680175
prostate cancer24 / 102680233
retinoblastoma2 / 4635643
skin tumor30 / 124949240
soft tissue/muscle tissue tumor9 / 12519171
uterine tumor10 / 90257110
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue6 / 13106457
adrenal gland2 / 3319760
ascites6 / 40015149
bladder2 / 2975767
blood13 / 123478105
bone9 / 71655125
bone marrow5 / 48801102
brain163 / 1100989148
cervix8 / 48171166
connective tissue20 / 149255133
ear2 / 16212123
embryonic tissue18 / 21572283
esophagus3 / 20209148
eye12 / 21105456
heart6 / 8962666
intestine37 / 234472157
kidney26 / 211777122
larynx4 / 24145165
liver29 / 207743139
lung49 / 336974145
lymph15 / 44270338
lymph node5 / 9161054
mammary gland32 / 153271208
mouth33 / 67052492
muscle2 / 10771518
nerve2 / 15768126
ovary12 / 102051117
pancreas11 / 21481251
parathyroid0 / 205390 
pharynx6 / 41328145
pituitary gland4 / 16585241
placenta29 / 280825103
prostate29 / 189345153
salivary gland1 / 2015549
skin51 / 210574242
spleen5 / 5395292
stomach24 / 96619248
testis48 / 330442145
thymus22 / 81131271
thyroid14 / 47473294
tonsil0 / 169990 
trachea15 / 52413286
umbilical cord7 / 13680511
uterus22 / 23287894
vascular9 / 51780173
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 217749_at
Cell line Expression level Expression bar
721_B_lymphoblasts231.2
Adipocyte83.75
AdrenalCortex38.35
Adrenalgland79.6
Amygdala40.15
Appendix24.4
AtrioventricularNode11.3
BDCA4+_DentriticCells190.7
Bonemarrow40.95
BronchialEpithelialCells234.1
CD105+_Endothelial50.6
CD14+_Monocytes52.15
CD19+_BCells(neg._sel.)32.75
CD33+_Myeloid59.65
CD34+97.7
CD4+_Tcells51.8
CD56+_NKCells89.55
CD71+_EarlyErythroid20.7
CD8+_Tcells57.15
CardiacMyocytes78.55
Caudatenucleus34.85
Cerebellum45.7
CerebellumPeduncles44.1
CiliaryGanglion15.3
CingulateCortex86.95
Colorectaladenocarcinoma81.5
DorsalRootGanglion16.8
FetalThyroid64.55
Fetalbrain40.35
Fetalliver27.5
Fetallung61.9
GlobusPallidus28.1
Heart92.7
Hypothalamus54.35
Kidney46.3
Leukemia_chronicMyelogenousK-56254.95
Leukemia_promyelocytic-HL-6035.6
Leukemialymphoblastic(MOLT-4)41.45
Liver79.45
Lung73.85
Lymphnode49.8
Lymphoma_burkitts(Daudi)87.65
Lymphoma_burkitts(Raji)24.15
MedullaOblongata51.65
OccipitalLobe44.25
OlfactoryBulb32.95
Ovary21.8
Pancreas55.75
PancreaticIslet122.35
ParietalLobe33.85
Pituitary83.2
Placenta140.05
Pons37.7
PrefrontalCortex51.35
Prostate110.6
Salivarygland62.25
SkeletalMuscle38.65
Skin12.4
SmoothMuscle189.75
Spinalcord38.8
SubthalamicNucleus51.1
SuperiorCervicalGanglion19.05
TemporalLobe53.45
Testis31.25
TestisGermCell42.4
TestisIntersitial18.75
TestisLeydigCell32.9
TestisSeminiferousTubule38.85
Thalamus95.5
Thymus84.3
Thyroid54.1
Tongue26.9
Tonsil31.1
Trachea74.4
TrigeminalGanglion21.25
Uterus39.9
UterusCorpus30.2
WholeBlood68.75
Wholebrain73.3
colon52.2
pineal_day58.16
pineal_night49.98
retina40.6
small_intestine75.3
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_5581_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala5.61 ± 0.39
Basal Forebrain5.55 ± 0.26
Basal Part of Pons6.36 ± 0.24
Cerebellar Cortex5.8 ± 0.28
Cerebellar Nuclei6.1 ± 0.26
Claustrum5.94 ± 0.3
Epithalamus5.48 ± 0.43
Frontal Lobe5.95 ± 0.39
Globus Pallidus5.5 ± 0.44
Hypothalamus5.94 ± 0.44
Insula5.88 ± 0.3
Limbic Lobe5.96 ± 0.41
Mesencephalon5.77 ± 0.47
Myelencephalon5.84 ± 0.45
Occipital Lobe5.79 ± 0.38
Parietal Lobe5.95 ± 0.42
Pontine Tegmentum5.84 ± 0.3
Striatum5.39 ± 0.39
Subthalamus6.02 ± 0.29
Temporal Lobe5.95 ± 0.34
Thalamus5.89 ± 0.34
White Matter5.69 ± 0.55
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
CopgCBCerebellum100
100
CopgCTXCerebral cortex100
100
CopgHIPHippocampal region100
100
CopgHPFHippocampal formation100
100
CopgHYHypothalamus100
100
CopgLSXLateral septal complex100
100
CopgMBMidbrain100
100
CopgMYMedulla100
100
CopgOLFOlfactory bulb100
100
CopgPPons100
100
CopgPALPallidum100
100
CopgRHPRetrohippocampal region100
100
CopgsAMYStriatum-like amygdalar nuclei100
100
CopgSTRStriatum100
100
CopgSTRdStriatum dorsal region100
100
CopgSTRvStriatum ventral region100
100
CopgTHThalamus100
100
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
COPG_HUMAN_0 0 0 0 DSPLFDFIESCLR PRIDE
COPG_HUMAN_0 0 0 0 ELAPAVSVLQLFCSSPK PRIDE
COPG_HUMAN_0 0 0 0 FGAQNEEMLPSILVLLK PRIDE
COPG_HUMAN_0 0 0 0 SIATLAITTLLK PRIDE
COPG_HUMAN_0 0 0 0 SLEELPVDIILASVG PRIDE
COPG_HUMAN_145 23 145 167 QAIVDKVPSVSSSALVSSLHLLK PRIDE
COPG_HUMAN_283 17 283 299 ELAPAVSVLQLFCSSPK PRIDE
COPG_HUMAN_284 17 284 300 ELAPAVSVLQLFCSSPK PRIDE
COPG_HUMAN_338 12 338 349 SIATLAITTLLK PRIDE
COPG_HUMAN_339 12 339 350 SIATLAITTLLK PRIDE
COPG_HUMAN_480 9 480 488 VVLEHEEVR PRIDE
COPG_HUMAN_497 17 497 513 FGAQNEEMLPSILVLLK PRIDE
COPG_HUMAN_497 18 497 514 FGAQNEEMLPSILVLLKR PRIDE
COPG_HUMAN_516 10 516 525 CVMDDDNEVR PRIDE
COPG_HUMAN_578 13 578 590 SVPLATAPMAEQR PRIDE
COPG_HUMAN_610 15 610 624 QEIFQEQLAAVPEFR PRIDE
COPG_HUMAN_807 9 807 815 FLGMHPCER PRIDE
COPG_HUMAN_859 15 859 873 SLEELPVDIILASVG PRIDE
COPG_HUMAN_860 15 860 874 SLEELPVDIILASVG PRIDE
PAp00002119 17 284 300 ELAPAVSVLQLFCSSPK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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