Annotation Detail for PUF60


Gene Symbol: | PUF60 ( FIR,FLJ31379,RoBPI,SIAHBP1 ) |
---|---|
Gene Full Name: | poly-U binding splicing factor 60KDa |
Band: | 8q24.3 |
Quick Links | Entrez ID:22827; OMIM: 604819; Uniprot ID:PUF60_HUMAN; ENSEMBL ID: ENSG00000179950; HGNC ID: 17042 |
Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.521924
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
![]() | |||
embryoid body | 20 / 70761 | 282 | ![]() |
blastocyst | 24 / 62319 | 385 | ![]() |
fetus | 59 / 564012 | 104 | ![]() |
neonate | 0 / 31097 | 0 | |
infant | 0 / 23620 | 0 | |
juvenile | 14 / 55556 | 251 | ![]() |
adult | 264 / 1939121 | 136 | ![]() |
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
![]() | |||
adrenal tumor | 1 / 12794 | 78 | ![]() |
bladder carcinoma | 0 / 17475 | 0 | |
breast (mammary gland) tumor | 6 / 94178 | 63 | ![]() |
cervical tumor | 12 / 34366 | 349 | ![]() |
chondrosarcoma | 5 / 82823 | 60 | ![]() |
colorectal tumor | 19 / 114246 | 166 | ![]() |
esophageal tumor | 1 / 17290 | 57 | ![]() |
gastrointestinal tumor | 51 / 119369 | 427 | ![]() |
germ cell tumor | 33 / 263845 | 125 | ![]() |
glioma | 43 / 106883 | 402 | ![]() |
head and neck tumor | 10 / 136302 | 73 | ![]() |
kidney tumor | 19 / 68959 | 275 | ![]() |
leukemia | 16 / 95842 | 166 | ![]() |
liver tumor | 17 / 96359 | 176 | ![]() |
lung tumor | 55 / 103127 | 533 | ![]() |
lymphoma | 20 / 71755 | 278 | ![]() |
non-neoplasia | 3 / 97250 | 30 | ![]() |
normal | 368 / 3360307 | 109 | ![]() |
ovarian tumor | 28 / 76682 | 365 | ![]() |
pancreatic tumor | 37 / 104616 | 353 | ![]() |
primitive neuroectodermal tumor of the CNS | 29 / 125680 | 230 | ![]() |
prostate cancer | 25 / 102680 | 243 | ![]() |
retinoblastoma | 13 / 46356 | 280 | ![]() |
skin tumor | 52 / 124949 | 416 | ![]() |
soft tissue/muscle tissue tumor | 34 / 125191 | 271 | ![]() |
uterine tumor | 14 / 90257 | 155 | ![]() |
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
![]() | |||
adipose tissue | 3 / 13106 | 228 | ![]() |
adrenal gland | 3 / 33197 | 90 | ![]() |
ascites | 30 / 40015 | 749 | ![]() |
bladder | 1 / 29757 | 33 | ![]() |
blood | 25 / 123478 | 202 | ![]() |
bone | 8 / 71655 | 111 | ![]() |
bone marrow | 1 / 48801 | 20 | ![]() |
brain | 107 / 1100989 | 97 | ![]() |
cervix | 15 / 48171 | 311 | ![]() |
connective tissue | 4 / 149255 | 26 | ![]() |
ear | 1 / 16212 | 61 | ![]() |
embryonic tissue | 69 / 215722 | 319 | ![]() |
esophagus | 1 / 20209 | 49 | ![]() |
eye | 41 / 211054 | 194 | ![]() |
heart | 5 / 89626 | 55 | ![]() |
intestine | 25 / 234472 | 106 | ![]() |
kidney | 32 / 211777 | 151 | ![]() |
larynx | 5 / 24145 | 207 | ![]() |
liver | 22 / 207743 | 105 | ![]() |
lung | 73 / 336974 | 216 | ![]() |
lymph | 13 / 44270 | 293 | ![]() |
lymph node | 19 / 91610 | 207 | ![]() |
mammary gland | 10 / 153271 | 65 | ![]() |
mouth | 0 / 67052 | 0 | |
muscle | 17 / 107715 | 157 | ![]() |
nerve | 5 / 15768 | 317 | ![]() |
ovary | 37 / 102051 | 362 | ![]() |
pancreas | 37 / 214812 | 172 | ![]() |
parathyroid | 2 / 20539 | 97 | ![]() |
pharynx | 0 / 41328 | 0 | |
pituitary gland | 1 / 16585 | 60 | ![]() |
placenta | 50 / 280825 | 178 | ![]() |
prostate | 31 / 189345 | 163 | ![]() |
salivary gland | 3 / 20155 | 148 | ![]() |
skin | 62 / 210574 | 294 | ![]() |
spleen | 3 / 53952 | 55 | ![]() |
stomach | 2 / 96619 | 20 | ![]() |
testis | 9 / 330442 | 27 | ![]() |
thymus | 1 / 81131 | 12 | ![]() |
thyroid | 2 / 47473 | 42 | ![]() |
tonsil | 7 / 16999 | 411 | ![]() |
trachea | 0 / 52413 | 0 | |
umbilical cord | 0 / 13680 | 0 | |
uterus | 43 / 232878 | 184 | ![]() |
vascular | 0 / 51780 | 0 |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 209899_s_at
Cell line | Expression level | Expression bar |
---|---|---|
![]() | ||
721_B_lymphoblasts | 739.4 | ![]() |
Adipocyte | 148 | ![]() |
AdrenalCortex | 126.7 | ![]() |
Adrenalgland | 134.95 | ![]() |
Amygdala | 305 | ![]() |
Appendix | 68.05 | ![]() |
AtrioventricularNode | 73.6 | ![]() |
BDCA4+_DentriticCells | 462.55 | ![]() |
Bonemarrow | 133.85 | ![]() |
BronchialEpithelialCells | 312.35 | ![]() |
CD105+_Endothelial | 340.05 | ![]() |
CD14+_Monocytes | 413.95 | ![]() |
CD19+_BCells(neg._sel.) | 474.2 | ![]() |
CD33+_Myeloid | 310.75 | ![]() |
CD34+ | 402.05 | ![]() |
CD4+_Tcells | 553.95 | ![]() |
CD56+_NKCells | 545.25 | ![]() |
CD71+_EarlyErythroid | 440.05 | ![]() |
CD8+_Tcells | 408 | ![]() |
CardiacMyocytes | 274.5 | ![]() |
Caudatenucleus | 233.55 | ![]() |
Cerebellum | 142.5 | ![]() |
CerebellumPeduncles | 319.6 | ![]() |
CiliaryGanglion | 76.05 | ![]() |
CingulateCortex | 196.85 | ![]() |
Colorectaladenocarcinoma | 214.3 | ![]() |
DorsalRootGanglion | 90.95 | ![]() |
FetalThyroid | 312.9 | ![]() |
Fetalbrain | 251.2 | ![]() |
Fetalliver | 135.85 | ![]() |
Fetallung | 284.15 | ![]() |
GlobusPallidus | 96.75 | ![]() |
Heart | 522.8 | ![]() |
Hypothalamus | 445.15 | ![]() |
Kidney | 108.65 | ![]() |
Leukemia_chronicMyelogenousK-562 | 300.75 | ![]() |
Leukemia_promyelocytic-HL-60 | 228.05 | ![]() |
Leukemialymphoblastic(MOLT-4) | 437.85 | ![]() |
Liver | 662 | ![]() |
Lung | 563.3 | ![]() |
Lymphnode | 145.35 | ![]() |
Lymphoma_burkitts(Daudi) | 481.6 | ![]() |
Lymphoma_burkitts(Raji) | 293.4 | ![]() |
MedullaOblongata | 189.15 | ![]() |
OccipitalLobe | 200.2 | ![]() |
OlfactoryBulb | 250.5 | ![]() |
Ovary | 80 | ![]() |
Pancreas | 157.45 | ![]() |
PancreaticIslet | 165.75 | ![]() |
ParietalLobe | 222.15 | ![]() |
Pituitary | 242.25 | ![]() |
Placenta | 297.8 | ![]() |
Pons | 168.85 | ![]() |
PrefrontalCortex | 245.55 | ![]() |
Prostate | 546.3 | ![]() |
Salivarygland | 102.6 | ![]() |
SkeletalMuscle | 122.6 | ![]() |
Skin | 69.35 | ![]() |
SmoothMuscle | 310.15 | ![]() |
Spinalcord | 397.55 | ![]() |
SubthalamicNucleus | 100.1 | ![]() |
SuperiorCervicalGanglion | 50.45 | ![]() |
TemporalLobe | 209.5 | ![]() |
Testis | 375.15 | ![]() |
TestisGermCell | 239.75 | ![]() |
TestisIntersitial | 150.7 | ![]() |
TestisLeydigCell | 175.85 | ![]() |
TestisSeminiferousTubule | 145.85 | ![]() |
Thalamus | 336.65 | ![]() |
Thymus | 422.25 | ![]() |
Thyroid | 419.05 | ![]() |
Tongue | 138.6 | ![]() |
Tonsil | 144.65 | ![]() |
Trachea | 97.65 | ![]() |
TrigeminalGanglion | 41.05 | ![]() |
Uterus | 245.7 | ![]() |
UterusCorpus | 136 | ![]() |
WholeBlood | 182.05 | ![]() |
Wholebrain | 472.45 | ![]() |
colon | 168.7 | ![]() |
pineal_day | 356.48 | ![]() |
pineal_night | 313.02 | ![]() |
retina | 439.95 | ![]() |
small_intestine | 150.7 | ![]() |
- Probe name: A_23_P9756
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue | Expression(mean ± stddev) | Expression Bar |
---|---|---|
Amygdala | 9.67 ± 0.41 | ![]() ![]() ![]() |
Basal Forebrain | 9.84 ± 0.19 | ![]() ![]() ![]() |
Basal Part of Pons | 10.21 ± 0.24 | ![]() ![]() ![]() |
Cerebellar Cortex | 9.89 ± 0.28 | ![]() ![]() ![]() |
Cerebellar Nuclei | 9.97 ± 0.22 | ![]() ![]() ![]() |
Claustrum | 9.45 ± 0.51 | ![]() ![]() ![]() |
Epithalamus | 10.25 ± 0.31 | ![]() ![]() ![]() |
Frontal Lobe | 10.05 ± 0.27 | ![]() ![]() ![]() |
Globus Pallidus | 10.11 ± 0.27 | ![]() ![]() ![]() |
Hypothalamus | 9.96 ± 0.3 | ![]() ![]() ![]() |
Insula | 10 ± 0.21 | ![]() ![]() ![]() |
Limbic Lobe | 9.84 ± 0.48 | ![]() ![]() ![]() |
Mesencephalon | 9.85 ± 0.35 | ![]() ![]() ![]() |
Myelencephalon | 9.93 ± 0.36 | ![]() ![]() ![]() |
Occipital Lobe | 9.54 ± 0.36 | ![]() ![]() ![]() |
Parietal Lobe | 9.92 ± 0.33 | ![]() ![]() ![]() |
Pontine Tegmentum | 9.89 ± 0.3 | ![]() ![]() ![]() |
Striatum | 9.76 ± 0.29 | ![]() ![]() ![]() |
Subthalamus | 10.02 ± 0.11 | ![]() ![]() ![]() |
Temporal Lobe | 10.03 ± 0.33 | ![]() ![]() ![]() |
Thalamus | 9.91 ± 0.26 | ![]() ![]() ![]() |
White Matter | 10.7 ± 0.2 | ![]() ![]() ![]() |
Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
---|---|---|---|---|
2410104I19Rik | CB | Cerebellum | 70.5 | ![]() |
100 | ![]() | |||
2410104I19Rik | CTX | Cerebral cortex | 100 | ![]() |
100 | ![]() | |||
2410104I19Rik | HIP | Hippocampal region | 100 | ![]() |
100 | ![]() | |||
2410104I19Rik | HPF | Hippocampal formation | 100 | ![]() |
100 | ![]() | |||
2410104I19Rik | HY | Hypothalamus | 100 | ![]() |
100 | ![]() | |||
2410104I19Rik | LSX | Lateral septal complex | 100 | ![]() |
100 | ![]() | |||
2410104I19Rik | MB | Midbrain | 100 | ![]() |
100 | ![]() | |||
2410104I19Rik | MY | Medulla | 100 | ![]() |
100 | ![]() | |||
2410104I19Rik | OLF | Olfactory bulb | 100 | ![]() |
100 | ![]() | |||
2410104I19Rik | P | Pons | 100 | ![]() |
100 | ![]() | |||
2410104I19Rik | PAL | Pallidum | 100 | ![]() |
100 | ![]() | |||
2410104I19Rik | RHP | Retrohippocampal region | 100 | ![]() |
100 | ![]() | |||
2410104I19Rik | sAMY | Striatum-like amygdalar nuclei | 100 | ![]() |
100 | ![]() | |||
2410104I19Rik | STR | Striatum | 100 | ![]() |
100 | ![]() | |||
2410104I19Rik | STRd | Striatum dorsal region | 100 | ![]() |
100 | ![]() | |||
2410104I19Rik | STRv | Striatum ventral region | 100 | ![]() |
100 | ![]() | |||
2410104I19Rik | TH | Thalamus | 100 | ![]() |
100 | ![]() |
Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
---|---|---|---|---|---|
PAp00005894 | 28 | 468 | 495 | NMVDPKDIDDDLEGEVTEECGKFGAVNR | Peptide Atlas |
PUF60_HUMAN_502 | 12 | 502 | 513 | QGEEEDAEIIVK | PRIDE |