AutismKB 2.0

Annotation Detail for RAB11FIP2


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Basic Information Top
Gene Symbol:RAB11FIP2 ( KIAA0941,Rab11-FIP2,nRip11 )
Gene Full Name: RAB11 family interacting protein 2 (class I)
Band: 10q26.11
Quick LinksEntrez ID:22841; OMIM: 608599; Uniprot ID:RFIP2_HUMAN; ENSEMBL ID: ENSG00000107560; HGNC ID: 29152
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body1 / 7076114
blastocyst0 / 623190 
fetus22 / 56401239
neonate0 / 310970 
infant0 / 236200 
juvenile1 / 5555617
adult52 / 193912126
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma2 / 8282324
colorectal tumor2 / 11424617
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor5 / 26384518
glioma3 / 10688328
head and neck tumor0 / 1363020 
kidney tumor3 / 6895943
leukemia3 / 9584231
liver tumor1 / 9635910
lung tumor1 / 1031279
lymphoma1 / 7175513
non-neoplasia3 / 9725030
normal74 / 336030722
ovarian tumor6 / 7668278
pancreatic tumor1 / 1046169
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer14 / 102680136
retinoblastoma1 / 4635621
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor3 / 12519123
uterine tumor1 / 9025711
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland1 / 3319730
ascites0 / 400150 
bladder0 / 297570 
blood1 / 1234788
bone3 / 7165541
bone marrow0 / 488010 
brain14 / 110098912
cervix0 / 481710 
connective tissue3 / 14925520
ear1 / 1621261
embryonic tissue3 / 21572213
esophagus0 / 202090 
eye8 / 21105437
heart3 / 8962633
intestine4 / 23447217
kidney7 / 21177733
larynx0 / 241450 
liver3 / 20774314
lung5 / 33697414
lymph1 / 4427022
lymph node6 / 9161065
mammary gland0 / 1532710 
mouth0 / 670520 
muscle3 / 10771527
nerve0 / 157680 
ovary4 / 10205139
pancreas4 / 21481218
parathyroid3 / 20539146
pharynx0 / 413280 
pituitary gland3 / 16585180
placenta3 / 28082510
prostate15 / 18934579
salivary gland0 / 201550 
skin4 / 21057418
spleen0 / 539520 
stomach0 / 966190 
testis2 / 3304426
thymus1 / 8113112
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus6 / 23287825
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 203883_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts8.1
Adipocyte8.25
AdrenalCortex9.35
Adrenalgland7.35
Amygdala18.1
Appendix9.75
AtrioventricularNode7.95
BDCA4+_DentriticCells10.6
Bonemarrow7.4
BronchialEpithelialCells5.85
CD105+_Endothelial6.45
CD14+_Monocytes8.4
CD19+_BCells(neg._sel.)11.15
CD33+_Myeloid9.1
CD34+7.85
CD4+_Tcells14.95
CD56+_NKCells9.4
CD71+_EarlyErythroid6.35
CD8+_Tcells17.3
CardiacMyocytes9.9
Caudatenucleus8.9
Cerebellum6.3
CerebellumPeduncles8.85
CiliaryGanglion6.55
CingulateCortex17.05
Colorectaladenocarcinoma6.45
DorsalRootGanglion7.35
FetalThyroid9.15
Fetalbrain9.85
Fetalliver6.35
Fetallung5.45
GlobusPallidus9.4
Heart12.55
Hypothalamus10.25
Kidney7.2
Leukemia_chronicMyelogenousK-5626.25
Leukemia_promyelocytic-HL-606.3
Leukemialymphoblastic(MOLT-4)5.5
Liver11.45
Lung7.4
Lymphnode6.15
Lymphoma_burkitts(Daudi)10.35
Lymphoma_burkitts(Raji)11.8
MedullaOblongata11.75
OccipitalLobe14.15
OlfactoryBulb7.75
Ovary5.75
Pancreas6.45
PancreaticIslet7.25
ParietalLobe25.8
Pituitary20.15
Placenta6.85
Pons12.65
PrefrontalCortex152.4
Prostate9.5
Salivarygland5.5
SkeletalMuscle12.35
Skin6.6
SmoothMuscle7.55
Spinalcord7.55
SubthalamicNucleus10.6
SuperiorCervicalGanglion11.95
TemporalLobe13.7
Testis6.1
TestisGermCell11.1
TestisIntersitial5.95
TestisLeydigCell7.65
TestisSeminiferousTubule5.65
Thalamus9.3
Thymus5.45
Thyroid13.25
Tongue8.55
Tonsil7.1
Trachea6.8
TrigeminalGanglion9.75
Uterus91.5
UterusCorpus7.05
WholeBlood7.35
Wholebrain11
colon7.8
pineal_day49.86
pineal_night46.16
retina9.2
small_intestine7.05
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_24_P363953
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala9.87 ± 0.26
Basal Forebrain9.51 ± 0.12
Basal Part of Pons9.44 ± 0.18
Cerebellar Cortex9.44 ± 0.13
Cerebellar Nuclei9.11 ± 0.28
Claustrum9.75 ± 0.16
Epithalamus9.37 ± 0.2
Frontal Lobe9.55 ± 0.25
Globus Pallidus8.87 ± 0.31
Hypothalamus9.19 ± 0.23
Insula9.65 ± 0.22
Limbic Lobe9.79 ± 0.29
Mesencephalon9.46 ± 0.25
Myelencephalon9.57 ± 0.22
Occipital Lobe9.98 ± 0.27
Parietal Lobe9.71 ± 0.19
Pontine Tegmentum9.57 ± 0.2
Striatum9.95 ± 0.15
Subthalamus9.42 ± 0.2
Temporal Lobe9.61 ± 0.21
Thalamus9.59 ± 0.19
White Matter9.21 ± 0.23
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Rab11fip2CBCerebellum19.32
23.89
Rab11fip2CTXCerebral cortex68.78
57.29
Rab11fip2HIPHippocampal region54.3
87.74
Rab11fip2HPFHippocampal formation52.15
70.18
Rab11fip2HYHypothalamus10.8
8.36
Rab11fip2LSXLateral septal complex26.46
20.76
Rab11fip2MBMidbrain12.12
11.12
Rab11fip2MYMedulla14
14.63
Rab11fip2OLFOlfactory bulb50.17
44.15
Rab11fip2PPons11.95
12.05
Rab11fip2PALPallidum13.15
11.7
Rab11fip2RHPRetrohippocampal region47.15
41.11
Rab11fip2sAMYStriatum-like amygdalar nuclei44.77
34.97
Rab11fip2STRStriatum45.8
35.54
Rab11fip2STRdStriatum dorsal region46.36
36.04
Rab11fip2STRvStriatum ventral region54.33
40.85
Rab11fip2THThalamus21.21
19.82
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
RFIP2_HUMAN_108 7 108 114 IFEDKQR PRIDE

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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