AutismKB 2.0

Annotation Detail for VASH1


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Basic Information Top
Gene Symbol:VASH1 ( KIAA1036 )
Gene Full Name: vasohibin 1
Band: 14q24.3
Quick LinksEntrez ID:22846; OMIM: 609011; Uniprot ID:VASH1_HUMAN; ENSEMBL ID: ENSG00000071246; HGNC ID: 19964
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body1 / 7076114
blastocyst0 / 623190 
fetus25 / 56401244
neonate0 / 310970 
infant1 / 2362042
juvenile0 / 555560 
adult74 / 193912138
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor1 / 9417810
cervical tumor0 / 343660 
chondrosarcoma4 / 8282348
colorectal tumor1 / 1142468
esophageal tumor0 / 172900 
gastrointestinal tumor3 / 11936925
germ cell tumor9 / 26384534
glioma12 / 106883112
head and neck tumor2 / 13630214
kidney tumor0 / 689590 
leukemia5 / 9584252
liver tumor0 / 963590 
lung tumor13 / 103127126
lymphoma0 / 717550 
non-neoplasia3 / 9725030
normal109 / 336030732
ovarian tumor1 / 7668213
pancreatic tumor4 / 10461638
primitive neuroectodermal tumor of the CNS4 / 12568031
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor5 / 12494940
soft tissue/muscle tissue tumor3 / 12519123
uterine tumor3 / 9025733
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland1 / 3319730
ascites0 / 400150 
bladder0 / 297570 
blood2 / 12347816
bone4 / 7165555
bone marrow0 / 488010 
brain44 / 110098939
cervix0 / 481710 
connective tissue5 / 14925533
ear0 / 162120 
embryonic tissue3 / 21572213
esophagus0 / 202090 
eye14 / 21105466
heart5 / 8962655
intestine4 / 23447217
kidney1 / 2117774
larynx2 / 2414582
liver0 / 2077430 
lung31 / 33697491
lymph0 / 442700 
lymph node1 / 9161010
mammary gland1 / 1532716
mouth0 / 670520 
muscle1 / 1077159
nerve0 / 157680 
ovary2 / 10205119
pancreas8 / 21481237
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta7 / 28082524
prostate0 / 1893450 
salivary gland0 / 201550 
skin7 / 21057433
spleen2 / 5395237
stomach1 / 9661910
testis7 / 33044221
thymus0 / 811310 
thyroid1 / 4747321
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus12 / 23287851
vascular5 / 5178096
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 203940_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts4.95
Adipocyte3.9
AdrenalCortex5.15
Adrenalgland3.75
Amygdala5.7
Appendix4.1
AtrioventricularNode3.1
BDCA4+_DentriticCells34.45
Bonemarrow3.95
BronchialEpithelialCells3.85
CD105+_Endothelial4.25
CD14+_Monocytes8
CD19+_BCells(neg._sel.)4.25
CD33+_Myeloid15.95
CD34+5.35
CD4+_Tcells4.4
CD56+_NKCells6.75
CD71+_EarlyErythroid4.75
CD8+_Tcells3.9
CardiacMyocytes6.95
Caudatenucleus6
Cerebellum3.5
CerebellumPeduncles6
CiliaryGanglion2.9
CingulateCortex4.25
Colorectaladenocarcinoma4.2
DorsalRootGanglion3.15
FetalThyroid4.85
Fetalbrain35.75
Fetalliver3.6
Fetallung3.75
GlobusPallidus3.05
Heart10.15
Hypothalamus10.75
Kidney3.35
Leukemia_chronicMyelogenousK-5623.6
Leukemia_promyelocytic-HL-603.45
Leukemialymphoblastic(MOLT-4)3.15
Liver5.45
Lung4.6
Lymphnode3.6
Lymphoma_burkitts(Daudi)5.2
Lymphoma_burkitts(Raji)6.2
MedullaOblongata3.8
OccipitalLobe4.05
OlfactoryBulb3.3
Ovary2.75
Pancreas3.35
PancreaticIslet4.45
ParietalLobe4.6
Pituitary4.7
Placenta6.15
Pons4.55
PrefrontalCortex8.65
Prostate4.85
Salivarygland3.3
SkeletalMuscle4.75
Skin3.2
SmoothMuscle4.75
Spinalcord6.5
SubthalamicNucleus3.8
SuperiorCervicalGanglion4.75
TemporalLobe4
Testis3.6
TestisGermCell3.45
TestisIntersitial3.5
TestisLeydigCell4.1
TestisSeminiferousTubule3.6
Thalamus5.1
Thymus3.25
Thyroid6.5
Tongue4.05
Tonsil4.05
Trachea3.4
TrigeminalGanglion4.15
Uterus3.6
UterusCorpus3.75
WholeBlood4.3
Wholebrain3.55
colon4.65
pineal_day43.24
pineal_night65.88
retina34.6
small_intestine4.45
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_24_P304629
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala4.68 ± 0.6
Basal Forebrain4.58 ± 0.4
Basal Part of Pons4.94 ± 0.49
Cerebellar Cortex5.09 ± 0.44
Cerebellar Nuclei5.12 ± 0.32
Claustrum4.97 ± 0.77
Epithalamus4.56 ± 0.4
Frontal Lobe4.79 ± 0.44
Globus Pallidus5.51 ± 0.4
Hypothalamus4.48 ± 0.45
Insula5.07 ± 0.26
Limbic Lobe5.02 ± 0.39
Mesencephalon4.73 ± 0.46
Myelencephalon4.86 ± 0.51
Occipital Lobe4.82 ± 0.37
Parietal Lobe4.77 ± 0.42
Pontine Tegmentum4.89 ± 0.47
Striatum4.62 ± 0.36
Subthalamus4.87 ± 0.33
Temporal Lobe4.98 ± 0.4
Thalamus4.77 ± 0.42
White Matter5.7 ± 0.2
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Vash1CBCerebellum36.4
47.26
Vash1CTXCerebral cortex100
90.92
Vash1HIPHippocampal region63.96
100
Vash1HPFHippocampal formation78.18
100
Vash1HYHypothalamus61.35
55.51
Vash1LSXLateral septal complex69.96
62.28
Vash1MBMidbrain46.45
46.92
Vash1MYMedulla48.8
51.62
Vash1OLFOlfactory bulb96.56
90.03
Vash1PPons50.13
54.39
Vash1PALPallidum54.07
50.54
Vash1RHPRetrohippocampal region100
96.49
Vash1sAMYStriatum-like amygdalar nuclei97.08
76.71
Vash1STRStriatum61.48
46.92
Vash1STRdStriatum dorsal region58.75
45.19
Vash1STRvStriatum ventral region47.18
31.76
Vash1THThalamus73.78
70.46
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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