AutismKB 2.0

Annotation Detail for NTNG1


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Basic Information Top
Gene Symbol:NTNG1 ( KIAA0976,Lmnt1 )
Gene Full Name: netrin G1
Band: 1p13.3
Quick LinksEntrez ID:22854; OMIM: 608818; Uniprot ID:NTNG1_HUMAN; ENSEMBL ID: ENSG00000162631; HGNC ID: 23319
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body1 / 7076114
blastocyst0 / 623190 
fetus17 / 56401230
neonate0 / 310970 
infant0 / 236200 
juvenile2 / 5555635
adult23 / 193912111
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor6 / 26384522
glioma0 / 1068830 
head and neck tumor0 / 1363020 
kidney tumor7 / 68959101
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal88 / 336030726
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS1 / 1256807
prostate cancer1 / 1026809
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor1 / 1251917
uterine tumor3 / 9025733
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood1 / 1234788
bone0 / 716550 
bone marrow0 / 488010 
brain55 / 110098949
cervix0 / 481710 
connective tissue1 / 1492556
ear0 / 162120 
embryonic tissue3 / 21572213
esophagus0 / 202090 
eye5 / 21105423
heart3 / 8962633
intestine0 / 2344720 
kidney10 / 21177747
larynx0 / 241450 
liver0 / 2077430 
lung4 / 33697411
lymph0 / 442700 
lymph node1 / 9161010
mammary gland0 / 1532710 
mouth0 / 670520 
muscle0 / 1077150 
nerve1 / 1576863
ovary0 / 1020510 
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta3 / 28082510
prostate1 / 1893455
salivary gland0 / 201550 
skin3 / 21057414
spleen0 / 539520 
stomach0 / 966190 
testis3 / 3304429
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus3 / 23287812
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: Primary tumors (U95A)
  • Affymatrix Probe ID: 37429_g_at
Cell line Expression level Expression bar
Pr1T2.32
Pr4T11.732
Pr5T2.351
Pr7T2.627
Pr1N2.647
Pr5N2.58
Pr6T2.984
Pr3N2.569
Pr3T2.639
Pr4N2.601
Pr2N2.51
Pr8N2.623
Pr8T2.749
Pr9N2.644
Pr10N2.663
Pr10T2.862
Pr9T2.58
Pr11T2.66
Pr12T2.614
Pr13AT2.695
Pr13BT2.544
Pr21T2.665
Pr22T2.582
Pr30T2.927
Pr23T2.821
Pr19T38.353
Pr26T2.686
Pr31T4.432
Pr16T57.542
Pr17T2.685
Pr24T2.566
Pr27T2.507
Pr29T4.49
OVR1022.638
HUOVR2.521
G22.91
G32.803
G52.64
G62.663
G82.496
G92.622
CO7T2.754
CO8T3.412
CO15T2.849
CO27T2.812
CO30T2.884
CO32T2.709
CO40T2.674
CO52N3.053
CO62N3.421
K12.602
K22.614
K32.443
K42.654
K14N3.37
K162.745
K173.049
K192.708
K202.706
K222.256
CO9T2.696
CO20T2.86
CO24T2.753
CO36N2.936
K182.632
P1N3.414
P2N2.969
P5N2.958
P85.734
P113.811
P172.801
K212.871
K25N3.694
K28N5.984
CO42T2.808
P222.607
P13N2.538
LU11T2.653
LU16T2.778
LU7T2.612
LU8T2.585
LU12T2.671
LU13T2.732
LU5T2.927
LU6T2.856
LU14T2.698
LU17T2.838
LU50N2.549
LU52N2.785
LU18T2.717
LU55N4.853
LU3N4.41
P16B2.973
P232.53
OVR162.626
OVR192.621
OVR272.121
OVR282.54
OVR278E2.724
OVR22.546
OVR52.555
OVR82.735
OVR112.686
OVR122.656
OVR132.679
OVR222.748
OVR262.768
OVR103.069
OVR278S3.02
OVR12.619
LU19T2.669
LU20T2.714
LU24T2.74
LU25T2.706
LU31T2.987
LU34T2.792
LU39T2.365
CO14T2.833
CO21T3.027
CO23T3.265
CO41N2.659
LU40T2.882
LU41T2.523
LU44T2.513
LU46T2.718
LU49T2.815
L5N2.969
LU42T2.763
LU30T2.784
LU43T3.009
CO5T2.753
CO44T2.587
CO49T2.795
CO51T2.9
CO56T2.659
CO61T2.672
LU26T2.76
LU33T2.911
LU36T2.6
CO43T2.853
G182.956
G462.742
L11T2.98
L13N2.919
L30T2.915
L31T3.054
L32T3.517
L34T3.201
L35T3.003
B1N2.815
B5N2.722
B8T2.735
B10T2.922
B14T2.935
B16T2.741
B17T2.749
B1NR2.907
B20T3.184
B51NR2.83
B6T3.463
B15T3.045
B21T7.765
B29T2.853
B31T3.137
B32T3.672
B24T2.703
B46T2.62
B34T3.094
B36T2.775
B37T2.898
B38T2.809
B39T2.614
X1022.786
X116_022.672
G2802.606
X462.627
X582.641
G1862.793
G2962.771
L38T2.702
L31T.22.697
L26N2.87
N257ANTR2.744
N285BODY2.74
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_1221_PI416573500
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala5.19 ± 0.47
Basal Forebrain5.31 ± 0.35
Basal Part of Pons5.97 ± 0.76
Cerebellar Cortex5.27 ± 0.76
Cerebellar Nuclei5 ± 0.59
Claustrum5.09 ± 0.75
Epithalamus5.26 ± 1.03
Frontal Lobe5.41 ± 0.72
Globus Pallidus4.75 ± 0.48
Hypothalamus5.37 ± 0.47
Insula5.87 ± 0.48
Limbic Lobe5.13 ± 0.93
Mesencephalon5.45 ± 0.81
Myelencephalon5.55 ± 0.85
Occipital Lobe6.49 ± 0.95
Parietal Lobe5.46 ± 0.73
Pontine Tegmentum5.21 ± 0.86
Striatum4.68 ± 0.99
Subthalamus4.03 ± 0.62
Temporal Lobe5.6 ± 0.59
Thalamus6.84 ± 0.73
White Matter2.59 ± 0.47
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Ntng1CBCerebellum15.16
21.78
Ntng1CTXCerebral cortex25.06
21.18
Ntng1HIPHippocampal region21.83
35.93
Ntng1HPFHippocampal formation50.09
81.22
Ntng1HYHypothalamus28
28.28
Ntng1LSXLateral septal complex22.22
19.6
Ntng1MBMidbrain52.67
55.18
Ntng1MYMedulla35.86
48.08
Ntng1OLFOlfactory bulb40.27
65.74
Ntng1PPons33.79
37.39
Ntng1PALPallidum14.66
16.61
Ntng1RHPRetrohippocampal region83.76
100
Ntng1sAMYStriatum-like amygdalar nuclei26.49
22.35
Ntng1STRStriatum9.88
7.98
Ntng1STRdStriatum dorsal region4.71
3.45
Ntng1STRvStriatum ventral region12.05
9.51
Ntng1THThalamus100
100
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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