AutismKB 2.0

Annotation Detail for FOXJ3


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Basic Information Top
Gene Symbol:FOXJ3 ( MGC165036,MGC176686 )
Gene Full Name: forkhead box J3
Band: 1p34.2
Quick LinksEntrez ID:22887; OMIM: NA; Uniprot ID:FOXJ3_HUMAN; ENSEMBL ID: ENSG00000198815; HGNC ID: 29178
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body4 / 7076156
blastocyst2 / 6231932
fetus23 / 56401240
neonate0 / 310970 
infant0 / 236200 
juvenile3 / 5555653
adult150 / 193912177
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma0 / 174750 
breast (mammary gland) tumor6 / 9417863
cervical tumor3 / 3436687
chondrosarcoma7 / 8282384
colorectal tumor7 / 11424661
esophageal tumor2 / 17290115
gastrointestinal tumor19 / 119369159
germ cell tumor15 / 26384556
glioma4 / 10688337
head and neck tumor5 / 13630236
kidney tumor1 / 6895914
leukemia3 / 9584231
liver tumor2 / 9635920
lung tumor3 / 10312729
lymphoma2 / 7175527
non-neoplasia4 / 9725041
normal155 / 336030746
ovarian tumor1 / 7668213
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS2 / 12568015
prostate cancer10 / 10268097
retinoblastoma1 / 4635621
skin tumor2 / 12494916
soft tissue/muscle tissue tumor4 / 12519131
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue2 / 13106152
adrenal gland1 / 3319730
ascites2 / 4001549
bladder1 / 2975733
blood2 / 12347816
bone6 / 7165583
bone marrow0 / 488010 
brain46 / 110098941
cervix7 / 48171145
connective tissue8 / 14925553
ear0 / 162120 
embryonic tissue10 / 21572246
esophagus2 / 2020998
eye12 / 21105456
heart3 / 8962633
intestine13 / 23447255
kidney2 / 2117779
larynx2 / 2414582
liver5 / 20774324
lung21 / 33697462
lymph2 / 4427045
lymph node4 / 9161043
mammary gland14 / 15327191
mouth2 / 6705229
muscle1 / 1077159
nerve0 / 157680 
ovary1 / 1020519
pancreas6 / 21481227
parathyroid1 / 2053948
pharynx1 / 4132824
pituitary gland2 / 16585120
placenta17 / 28082560
prostate17 / 18934589
salivary gland0 / 201550 
skin6 / 21057428
spleen0 / 539520 
stomach16 / 96619165
testis22 / 33044266
thymus6 / 8113173
thyroid3 / 4747363
tonsil0 / 169990 
trachea6 / 52413114
umbilical cord0 / 136800 
uterus13 / 23287855
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 217310_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts7.2
Adipocyte5.7
AdrenalCortex6.35
Adrenalgland5.05
Amygdala5.8
Appendix6.45
AtrioventricularNode5.1
BDCA4+_DentriticCells6.05
Bonemarrow5.85
BronchialEpithelialCells5.55
CD105+_Endothelial5.75
CD14+_Monocytes6.05
CD19+_BCells(neg._sel.)5.9
CD33+_Myeloid7.25
CD34+7.4
CD4+_Tcells6.05
CD56+_NKCells6.7
CD71+_EarlyErythroid5.4
CD8+_Tcells5.35
CardiacMyocytes8.45
Caudatenucleus5.2
Cerebellum4.7
CerebellumPeduncles6.65
CiliaryGanglion4.4
CingulateCortex6
Colorectaladenocarcinoma5.8
DorsalRootGanglion4.7
FetalThyroid5.7
Fetalbrain5.6
Fetalliver5.05
Fetallung4.5
GlobusPallidus4.4
Heart8.2
Hypothalamus6.25
Kidney5
Leukemia_chronicMyelogenousK-5625.15
Leukemia_promyelocytic-HL-605.1
Leukemialymphoblastic(MOLT-4)4.55
Liver8.2
Lung6.25
Lymphnode4.85
Lymphoma_burkitts(Daudi)7.55
Lymphoma_burkitts(Raji)8.1
MedullaOblongata5.3
OccipitalLobe5.2
OlfactoryBulb4.5
Ovary3.9
Pancreas4.7
PancreaticIslet6.3
ParietalLobe6.4
Pituitary6.7
Placenta5.85
Pons5.6
PrefrontalCortex7.05
Prostate6.55
Salivarygland4.8
SkeletalMuscle7.35
Skin4.8
SmoothMuscle6.5
Spinalcord6.4
SubthalamicNucleus5.3
SuperiorCervicalGanglion7
TemporalLobe5.4
Testis4.9
TestisGermCell4.8
TestisIntersitial4.85
TestisLeydigCell6.35
TestisSeminiferousTubule4.95
Thalamus5.95
Thymus4.4
Thyroid6.95
Tongue5.75
Tonsil5.65
Trachea4.85
TrigeminalGanglion6.15
Uterus4.6
UterusCorpus5.3
WholeBlood6.3
Wholebrain4.85
colon5.75
pineal_day7.16
pineal_night6.94
retina6.9
small_intestine5.55
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_1459_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala7.64 ± 0.41
Basal Forebrain7.75 ± 0.72
Basal Part of Pons7.35 ± 0.65
Cerebellar Cortex7.32 ± 0.49
Cerebellar Nuclei7.54 ± 0.52
Claustrum7.6 ± 0.55
Epithalamus7.01 ± 0.44
Frontal Lobe7.52 ± 0.57
Globus Pallidus8.25 ± 0.53
Hypothalamus7.36 ± 0.72
Insula7.53 ± 0.47
Limbic Lobe7.75 ± 0.55
Mesencephalon7.59 ± 0.57
Myelencephalon7.63 ± 0.6
Occipital Lobe7.75 ± 0.66
Parietal Lobe7.55 ± 0.58
Pontine Tegmentum7.52 ± 0.49
Striatum7.84 ± 0.58
Subthalamus7 ± 0.59
Temporal Lobe7.5 ± 0.54
Thalamus7.56 ± 0.54
White Matter7.79 ± 0.58
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Foxj3HYHypothalamus11.06
9.61
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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