AutismKB 2.0

Annotation Detail for TRAK1


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Basic Information Top
Gene Symbol:TRAK1 ( OIP106 )
Gene Full Name: trafficking protein, kinesin binding 1
Band: 3p22.1
Quick LinksEntrez ID:22906; OMIM: 608112; Uniprot ID:TRAK1_HUMAN; ENSEMBL ID: ENSG00000182606; HGNC ID: 29947
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body6 / 7076184
blastocyst4 / 6231964
fetus47 / 56401283
neonate0 / 310970 
infant0 / 236200 
juvenile2 / 5555635
adult181 / 193912193
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor2 / 12794156
bladder carcinoma4 / 17475228
breast (mammary gland) tumor7 / 9417874
cervical tumor0 / 343660 
chondrosarcoma9 / 82823108
colorectal tumor13 / 114246113
esophageal tumor0 / 172900 
gastrointestinal tumor16 / 119369134
germ cell tumor21 / 26384579
glioma9 / 10688384
head and neck tumor16 / 136302117
kidney tumor3 / 6895943
leukemia3 / 9584231
liver tumor2 / 9635920
lung tumor2 / 10312719
lymphoma2 / 7175527
non-neoplasia6 / 9725061
normal264 / 336030778
ovarian tumor3 / 7668239
pancreatic tumor13 / 104616124
primitive neuroectodermal tumor of the CNS7 / 12568055
prostate cancer3 / 10268029
retinoblastoma4 / 4635686
skin tumor4 / 12494932
soft tissue/muscle tissue tumor6 / 12519147
uterine tumor3 / 9025733
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue2 / 13106152
adrenal gland2 / 3319760
ascites10 / 40015249
bladder6 / 29757201
blood2 / 12347816
bone9 / 71655125
bone marrow1 / 4880120
brain73 / 110098966
cervix2 / 4817141
connective tissue5 / 14925533
ear1 / 1621261
embryonic tissue15 / 21572269
esophagus0 / 202090 
eye40 / 211054189
heart14 / 89626156
intestine21 / 23447289
kidney14 / 21177766
larynx4 / 24145165
liver3 / 20774314
lung37 / 336974109
lymph0 / 442700 
lymph node25 / 91610272
mammary gland25 / 153271163
mouth7 / 67052104
muscle4 / 10771537
nerve1 / 1576863
ovary4 / 10205139
pancreas25 / 214812116
parathyroid3 / 20539146
pharynx1 / 4132824
pituitary gland0 / 165850 
placenta13 / 28082546
prostate5 / 18934526
salivary gland1 / 2015549
skin7 / 21057433
spleen1 / 5395218
stomach9 / 9661993
testis13 / 33044239
thymus1 / 8113112
thyroid8 / 47473168
tonsil0 / 169990 
trachea6 / 52413114
umbilical cord0 / 136800 
uterus14 / 23287860
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 202080_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts62.45
Adipocyte18.7
AdrenalCortex14.55
Adrenalgland18.15
Amygdala81.75
Appendix27.8
AtrioventricularNode13.85
BDCA4+_DentriticCells66.25
Bonemarrow27.95
BronchialEpithelialCells23.15
CD105+_Endothelial17.05
CD14+_Monocytes56.2
CD19+_BCells(neg._sel.)166.1
CD33+_Myeloid61.35
CD34+39.55
CD4+_Tcells22
CD56+_NKCells32.5
CD71+_EarlyErythroid10.15
CD8+_Tcells17.85
CardiacMyocytes34.3
Caudatenucleus29.75
Cerebellum66.35
CerebellumPeduncles53.15
CiliaryGanglion7.25
CingulateCortex32.6
Colorectaladenocarcinoma26.2
DorsalRootGanglion16.8
FetalThyroid30.25
Fetalbrain112.9
Fetalliver11.4
Fetallung31.3
GlobusPallidus17.4
Heart25.7
Hypothalamus39.35
Kidney20.55
Leukemia_chronicMyelogenousK-56230.85
Leukemia_promyelocytic-HL-6038.7
Leukemialymphoblastic(MOLT-4)12.65
Liver21.85
Lung33.95
Lymphnode31.1
Lymphoma_burkitts(Daudi)49.65
Lymphoma_burkitts(Raji)58.6
MedullaOblongata32.55
OccipitalLobe44.15
OlfactoryBulb28.3
Ovary10.35
Pancreas12
PancreaticIslet39.8
ParietalLobe30.35
Pituitary30.8
Placenta32
Pons24.75
PrefrontalCortex45.65
Prostate33.85
Salivarygland24.85
SkeletalMuscle24.6
Skin14.9
SmoothMuscle26.55
Spinalcord54.65
SubthalamicNucleus27.15
SuperiorCervicalGanglion29.05
TemporalLobe26.85
Testis19.55
TestisGermCell26.15
TestisIntersitial17.3
TestisLeydigCell22
TestisSeminiferousTubule23.75
Thalamus40.75
Thymus18.4
Thyroid54.45
Tongue25.35
Tonsil28.5
Trachea39.65
TrigeminalGanglion27.85
Uterus34.55
UterusCorpus15.1
WholeBlood30.65
Wholebrain55.05
colon30.8
pineal_day71.44
pineal_night56.98
retina42.675
small_intestine23.35
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_11301_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala5.36 ± 0.33
Basal Forebrain5.23 ± 0.28
Basal Part of Pons5.43 ± 0.31
Cerebellar Cortex5.57 ± 0.33
Cerebellar Nuclei5.26 ± 0.51
Claustrum6.22 ± 0.42
Epithalamus5.6 ± 0.33
Frontal Lobe5.34 ± 0.41
Globus Pallidus5.08 ± 0.38
Hypothalamus5.42 ± 0.51
Insula5.39 ± 0.39
Limbic Lobe5.58 ± 0.38
Mesencephalon5.45 ± 0.47
Myelencephalon5.32 ± 0.48
Occipital Lobe5.48 ± 0.38
Parietal Lobe5.45 ± 0.43
Pontine Tegmentum5.31 ± 0.41
Striatum5.07 ± 0.33
Subthalamus5.27 ± 0.38
Temporal Lobe5.44 ± 0.37
Thalamus5.18 ± 0.44
White Matter5.33 ± 0.39
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Trak1HYHypothalamus15.27
11.63
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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