Annotation Detail for SEPHS2
Basic Information Top
| Gene Symbol: | SEPHS2 ( SPS2 ) |
|---|---|
| Gene Full Name: | selenophosphate synthetase 2 |
| Band: | 16p11.2 |
| Quick Links | Entrez ID:22928; OMIM: 606218; Uniprot ID:SPS2_HUMAN; ENSEMBL ID: ENSG00000179918,ENSG00000246275; HGNC ID: 19686 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.118725
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 6 / 70761 | 84 |  |
| blastocyst | 3 / 62319 | 48 |  |
| fetus | 62 / 564012 | 109 | |
| neonate | 13 / 31097 | 418 |  |
| infant | 7 / 23620 | 296 | |
| juvenile | 51 / 55556 | 917 | |
| adult | 227 / 1939121 | 117 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 1 / 12794 | 78 | |
| bladder carcinoma | 1 / 17475 | 57 | |
| breast (mammary gland) tumor | 18 / 94178 | 191 | |
| cervical tumor | 6 / 34366 | 174 | |
| chondrosarcoma | 5 / 82823 | 60 | |
| colorectal tumor | 17 / 114246 | 148 | |
| esophageal tumor | 3 / 17290 | 173 | |
| gastrointestinal tumor | 15 / 119369 | 125 | |
| germ cell tumor | 73 / 263845 | 276 | |
| glioma | 12 / 106883 | 112 | |
| head and neck tumor | 8 / 136302 | 58 | |
| kidney tumor | 11 / 68959 | 159 | |
| leukemia | 18 / 95842 | 187 | |
| liver tumor | 62 / 96359 | 643 | |
| lung tumor | 12 / 103127 | 116 | |
| lymphoma | 18 / 71755 | 250 | |
| non-neoplasia | 6 / 97250 | 61 | |
| normal | 466 / 3360307 | 138 | |
| ovarian tumor | 1 / 76682 | 13 | |
| pancreatic tumor | 15 / 104616 | 143 | |
| primitive neuroectodermal tumor of the CNS | 27 / 125680 | 214 | |
| prostate cancer | 11 / 102680 | 107 | |
| retinoblastoma | 4 / 46356 | 86 | |
| skin tumor | 9 / 124949 | 72 | |
| soft tissue/muscle tissue tumor | 16 / 125191 | 127 | |
| uterine tumor | 13 / 90257 | 144 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 4 / 33197 | 120 | |
| ascites | 3 / 40015 | 74 | |
| bladder | 7 / 29757 | 235 | |
| blood | 40 / 123478 | 323 | |
| bone | 8 / 71655 | 111 | |
| bone marrow | 5 / 48801 | 102 | |
| brain | 149 / 1100989 | 135 | |
| cervix | 6 / 48171 | 124 | |
| connective tissue | 13 / 149255 | 87 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 10 / 215722 | 46 | |
| esophagus | 3 / 20209 | 148 | |
| eye | 24 / 211054 | 113 | |
| heart | 18 / 89626 | 200 | |
| intestine | 49 / 234472 | 208 | |
| kidney | 67 / 211777 | 316 | |
| larynx | 1 / 24145 | 41 | |
| liver | 85 / 207743 | 409 | |
| lung | 33 / 336974 | 97 | |
| lymph | 10 / 44270 | 225 | |
| lymph node | 6 / 91610 | 65 | |
| mammary gland | 26 / 153271 | 169 | |
| mouth | 4 / 67052 | 59 | |
| muscle | 8 / 107715 | 74 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 1 / 102051 | 9 |  |
| pancreas | 28 / 214812 | 130 | |
| parathyroid | 1 / 20539 | 48 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 1 / 16585 | 60 | |
| placenta | 32 / 280825 | 113 | |
| prostate | 31 / 189345 | 163 | |
| salivary gland | 1 / 20155 | 49 | |
| skin | 22 / 210574 | 104 | |
| spleen | 13 / 53952 | 240 | |
| stomach | 16 / 96619 | 165 | |
| testis | 22 / 330442 | 66 | |
| thymus | 16 / 81131 | 197 | |
| thyroid | 4 / 47473 | 84 | |
| tonsil | 4 / 16999 | 235 | |
| trachea | 10 / 52413 | 190 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 33 / 232878 | 141 | |
| vascular | 12 / 51780 | 231 | |
Microarray in - Probe name: CUST_8110_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 6.89 ± 0.33 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 6.42 ± 0.24 | |
| Basal Part of Pons | 6.85 ± 0.35 | |
| Cerebellar Cortex | 6.81 ± 0.26 | |
| Cerebellar Nuclei | 6.87 ± 0.37 | |
| Claustrum | 6.49 ± 0.49 | |
| Epithalamus | 6.41 ± 0.31 | |
| Frontal Lobe | 6.73 ± 0.3 | |
| Globus Pallidus | 6.15 ± 0.43 | |
| Hypothalamus | 6.76 ± 0.27 | |
| Insula | 6.61 ± 0.26 | |
| Limbic Lobe | 7 ± 0.3 | |
| Mesencephalon | 6.75 ± 0.31 | |
| Myelencephalon | 6.76 ± 0.35 | |
| Occipital Lobe | 7.28 ± 0.26 | |
| Parietal Lobe | 6.82 ± 0.33 | |
| Pontine Tegmentum | 6.76 ± 0.37 | |
| Striatum | 6.92 ± 0.33 | |
| Subthalamus | 6.9 ± 0.12 | |
| Temporal Lobe | 6.79 ± 0.33 | |
| Thalamus | 6.74 ± 0.36 | |
| White Matter | 5.79 ± 0.36 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Sephs2 | CB | Cerebellum | 10.04 | |
| 10.58 | | |||
| Sephs2 | CTX | Cerebral cortex | 6.04 | |
| 4.63 | | |||
| Sephs2 | HIP | Hippocampal region | 9.91 | |
| 9.96 | | |||
| Sephs2 | HPF | Hippocampal formation | 7.59 | |
| 7.35 | | |||
| Sephs2 | HY | Hypothalamus | 0.84 | |
| 0.71 | | |||
| Sephs2 | LSX | Lateral septal complex | 1.2 | |
| 1.06 | | |||
| Sephs2 | MB | Midbrain | 1.58 | |
| 1.81 | | |||
| Sephs2 | MY | Medulla | 4.21 | |
| 4.93 | | |||
| Sephs2 | OLF | Olfactory bulb | 8.27 | |
| 6.42 | | |||
| Sephs2 | P | Pons | 2.18 | |
| 3.24 | | |||
| Sephs2 | PAL | Pallidum | 2.26 | |
| 2.01 | | |||
| Sephs2 | RHP | Retrohippocampal region | 3.15 | |
| 3.33 | | |||
| Sephs2 | sAMY | Striatum-like amygdalar nuclei | 1.52 | |
| 1.17 | | |||
| Sephs2 | STR | Striatum | 2.67 | |
| 1.98 | | |||
| Sephs2 | STRd | Striatum dorsal region | 2.5 | |
| 1.82 | | |||
| Sephs2 | STRv | Striatum ventral region | 4.57 | |
| 3.21 | | |||
| Sephs2 | TH | Thalamus | 3.12 | |
| 2.71 | |