AutismKB 2.0

Annotation Detail for SNW1


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Basic Information Top
Gene Symbol:SNW1 ( Bx42,MGC119379,NCOA-62,PRPF45,Prp45,SKIIP,SKIP )
Gene Full Name: SNW domain containing 1
Band: 14q24.3
Quick LinksEntrez ID:22938; OMIM: 603055; Uniprot ID:SNW1_HUMAN; ENSEMBL ID: ENSG00000100603; HGNC ID: 16696
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body4 / 7076156
blastocyst4 / 6231964
fetus72 / 564012127
neonate3 / 3109796
infant9 / 23620381
juvenile22 / 55556395
adult158 / 193912181
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma0 / 174750 
breast (mammary gland) tumor8 / 9417884
cervical tumor5 / 34366145
chondrosarcoma5 / 8282360
colorectal tumor5 / 11424643
esophageal tumor8 / 17290462
gastrointestinal tumor11 / 11936992
germ cell tumor36 / 263845136
glioma9 / 10688384
head and neck tumor0 / 1363020 
kidney tumor6 / 6895987
leukemia24 / 95842250
liver tumor20 / 96359207
lung tumor9 / 10312787
lymphoma16 / 71755222
non-neoplasia8 / 9725082
normal364 / 3360307108
ovarian tumor13 / 76682169
pancreatic tumor11 / 104616105
primitive neuroectodermal tumor of the CNS33 / 125680262
prostate cancer7 / 10268068
retinoblastoma8 / 46356172
skin tumor16 / 124949128
soft tissue/muscle tissue tumor11 / 12519187
uterine tumor12 / 90257132
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue2 / 13106152
adrenal gland8 / 33197240
ascites6 / 40015149
bladder3 / 29757100
blood26 / 123478210
bone8 / 71655111
bone marrow15 / 48801307
brain128 / 1100989116
cervix12 / 48171249
connective tissue12 / 14925580
ear4 / 16212246
embryonic tissue18 / 21572283
esophagus11 / 20209544
eye15 / 21105471
heart12 / 89626133
intestine19 / 23447281
kidney30 / 211777141
larynx0 / 241450 
liver34 / 207743163
lung32 / 33697494
lymph12 / 44270271
lymph node3 / 9161032
mammary gland16 / 153271104
mouth1 / 6705214
muscle13 / 107715120
nerve0 / 157680 
ovary14 / 102051137
pancreas13 / 21481260
parathyroid2 / 2053997
pharynx6 / 41328145
pituitary gland1 / 1658560
placenta22 / 28082578
prostate13 / 18934568
salivary gland0 / 201550 
skin21 / 21057499
spleen11 / 53952203
stomach3 / 9661931
testis60 / 330442181
thymus14 / 81131172
thyroid4 / 4747384
tonsil1 / 1699958
trachea4 / 5241376
umbilical cord2 / 13680146
uterus28 / 232878120
vascular10 / 51780193
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 201575_at
Cell line Expression level Expression bar
721_B_lymphoblasts657.2
Adipocyte91.65
AdrenalCortex92.8
Adrenalgland138.25
Amygdala298.2
Appendix87.75
AtrioventricularNode66.65
BDCA4+_DentriticCells528.05
Bonemarrow113.65
BronchialEpithelialCells339.35
CD105+_Endothelial1177.1
CD14+_Monocytes589.15
CD19+_BCells(neg._sel.)562.7
CD33+_Myeloid735.65
CD34+911
CD4+_Tcells503
CD56+_NKCells739.7
CD71+_EarlyErythroid644.05
CD8+_Tcells306.95
CardiacMyocytes162.7
Caudatenucleus150.3
Cerebellum98.5
CerebellumPeduncles149.7
CiliaryGanglion55.65
CingulateCortex144.5
Colorectaladenocarcinoma298.15
DorsalRootGanglion56.45
FetalThyroid241.8
Fetalbrain235.6
Fetalliver203.75
Fetallung232.15
GlobusPallidus48.15
Heart87.25
Hypothalamus212.2
Kidney56.95
Leukemia_chronicMyelogenousK-562351.45
Leukemia_promyelocytic-HL-60318.65
Leukemialymphoblastic(MOLT-4)220.5
Liver97.65
Lung121.7
Lymphnode175.95
Lymphoma_burkitts(Daudi)331.15
Lymphoma_burkitts(Raji)383.05
MedullaOblongata119.35
OccipitalLobe128.95
OlfactoryBulb116.5
Ovary59.65
Pancreas77.3
PancreaticIslet256.2
ParietalLobe77.85
Pituitary183.65
Placenta225.1
Pons90.75
PrefrontalCortex349.95
Prostate250.1
Salivarygland158.5
SkeletalMuscle127.1
Skin84.8
SmoothMuscle242.65
Spinalcord218.8
SubthalamicNucleus103.25
SuperiorCervicalGanglion99.85
TemporalLobe74.75
Testis366.55
TestisGermCell306.15
TestisIntersitial204.65
TestisLeydigCell292.2
TestisSeminiferousTubule256.75
Thalamus115.95
Thymus155.65
Thyroid353.7
Tongue120.3
Tonsil173.35
Trachea150.55
TrigeminalGanglion69.35
Uterus221.25
UterusCorpus133.1
WholeBlood426.15
Wholebrain85.95
colon248.8
pineal_day415.7
pineal_night426.32
retina126.425
small_intestine249.6
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_10432_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala5.61 ± 0.5
Basal Forebrain5.63 ± 0.13
Basal Part of Pons5.57 ± 0.39
Cerebellar Cortex5.77 ± 0.24
Cerebellar Nuclei5.81 ± 0.36
Claustrum5.66 ± 0.44
Epithalamus5.74 ± 0.43
Frontal Lobe5.53 ± 0.39
Globus Pallidus5.7 ± 0.4
Hypothalamus5.6 ± 0.32
Insula5.48 ± 0.21
Limbic Lobe5.49 ± 0.31
Mesencephalon5.49 ± 0.35
Myelencephalon5.54 ± 0.4
Occipital Lobe5.54 ± 0.37
Parietal Lobe5.53 ± 0.33
Pontine Tegmentum5.55 ± 0.45
Striatum5.51 ± 0.39
Subthalamus5.36 ± 0.11
Temporal Lobe5.54 ± 0.35
Thalamus5.53 ± 0.39
White Matter6.5 ± 0.15
Mouse Brain ISH
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00068596 22 417 438 GMDSGFAGGEDEIYNVYDQAWR Peptide Atlas
SNW1_HUMAN_2 24 2 25 ALTSFLPAPTQLSQDQLEAEEKAR PRIDE

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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