Annotation Detail for PTGR1
Basic Information Top
| Gene Symbol: | PTGR1 ( FLJ99229,LTB4DH,MGC34943,PGR1,ZADH3 ) |
|---|---|
| Gene Full Name: | prostaglandin reductase 1 |
| Band: | 9q31.3 |
| Quick Links | Entrez ID:22949; OMIM: 601274; Uniprot ID:PTGR1_HUMAN; ENSEMBL ID: ENSG00000106853; HGNC ID: 18429 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.584864
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 6 / 62319 | 96 |  |
| fetus | 20 / 564012 | 35 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 86 / 1939121 | 44 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 1 / 17475 | 57 | |
| breast (mammary gland) tumor | 2 / 94178 | 21 | |
| cervical tumor | 1 / 34366 | 29 | |
| chondrosarcoma | 2 / 82823 | 24 | |
| colorectal tumor | 6 / 114246 | 52 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 1 / 119369 | 8 |  |
| germ cell tumor | 0 / 263845 | 0 | |
| glioma | 4 / 106883 | 37 | |
| head and neck tumor | 1 / 136302 | 7 | |
| kidney tumor | 2 / 68959 | 29 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 21 / 96359 | 217 |  |
| lung tumor | 6 / 103127 | 58 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 4 / 97250 | 41 | |
| normal | 86 / 3360307 | 25 | |
| ovarian tumor | 1 / 76682 | 13 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 6 / 102680 | 58 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 3 / 124949 | 24 | |
| soft tissue/muscle tissue tumor | 35 / 125191 | 279 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 1 / 13106 | 76 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 1 / 29757 | 33 | |
| blood | 0 / 123478 | 0 | |
| bone | 2 / 71655 | 27 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 25 / 1100989 | 22 | |
| cervix | 1 / 48171 | 20 | |
| connective tissue | 6 / 149255 | 40 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 9 / 215722 | 41 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 4 / 211054 | 18 | |
| heart | 6 / 89626 | 66 | |
| intestine | 8 / 234472 | 34 | |
| kidney | 16 / 211777 | 75 | |
| larynx | 0 / 24145 | 0 | |
| liver | 32 / 207743 | 154 | |
| lung | 16 / 336974 | 47 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 2 / 153271 | 13 | |
| mouth | 1 / 67052 | 14 | |
| muscle | 3 / 107715 | 27 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 1 / 102051 | 9 | |
| pancreas | 0 / 214812 | 0 | |
| parathyroid | 1 / 20539 | 48 | |
| pharynx | 1 / 41328 | 24 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 1 / 280825 | 3 | |
| prostate | 10 / 189345 | 52 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 4 / 210574 | 18 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 0 / 330442 | 0 | |
| thymus | 1 / 81131 | 12 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 6 / 232878 | 25 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: A_23_P157809
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 7.5 ± 0.34 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 7.37 ± 0.17 | |
| Basal Part of Pons | 7.83 ± 0.24 | |
| Cerebellar Cortex | 7.61 ± 0.24 | |
| Cerebellar Nuclei | 7.15 ± 0.4 | |
| Claustrum | 7.65 ± 0.8 | |
| Epithalamus | 7.84 ± 0.42 | |
| Frontal Lobe | 7.48 ± 0.39 | |
| Globus Pallidus | 7.17 ± 0.29 | |
| Hypothalamus | 7.4 ± 0.3 | |
| Insula | 7.51 ± 0.21 | |
| Limbic Lobe | 7.68 ± 0.43 | |
| Mesencephalon | 7.3 ± 0.35 | |
| Myelencephalon | 7.37 ± 0.43 | |
| Occipital Lobe | 7.5 ± 0.4 | |
| Parietal Lobe | 7.45 ± 0.34 | |
| Pontine Tegmentum | 7.41 ± 0.39 | |
| Striatum | 7.59 ± 0.37 | |
| Subthalamus | 7.39 ± 0.25 | |
| Temporal Lobe | 7.41 ± 0.34 | |
| Thalamus | 7.09 ± 0.29 | |
| White Matter | 5.87 ± 0.67 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Ltb4dh | CB | Cerebellum | 7.33 | |
| 8.74 | | |||
| Ltb4dh | CTX | Cerebral cortex | 11.42 | |
| 8.6 | | |||
| Ltb4dh | HIP | Hippocampal region | 7.03 | |
| 6.48 | | |||
| Ltb4dh | HPF | Hippocampal formation | 6.59 | |
| 5.51 | | |||
| Ltb4dh | HY | Hypothalamus | 3.42 | |
| 3.07 | | |||
| Ltb4dh | LSX | Lateral septal complex | 4.92 | |
| 5.6 | | |||
| Ltb4dh | MB | Midbrain | 2.9 | |
| 3.54 | | |||
| Ltb4dh | MY | Medulla | 13.45 | |
| 13.69 | | |||
| Ltb4dh | OLF | Olfactory bulb | 29.08 | |
| 25.22 | | |||
| Ltb4dh | P | Pons | 7.99 | |
| 7.66 | | |||
| Ltb4dh | PAL | Pallidum | 5.15 | |
| 4.27 | | |||
| Ltb4dh | RHP | Retrohippocampal region | 5.88 | |
| 4.16 | | |||
| Ltb4dh | sAMY | Striatum-like amygdalar nuclei | 1.46 | |
| 1.52 | | |||
| Ltb4dh | STR | Striatum | 5.31 | |
| 4.12 | | |||
| Ltb4dh | STRd | Striatum dorsal region | 1.09 | |
| 0.93 | | |||
| Ltb4dh | STRv | Striatum ventral region | 21.87 | |
| 14.43 | | |||
| Ltb4dh | TH | Thalamus | 1.75 | |
| 1.53 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00000704 | 26 | 206 | 231 | ASPDGYDCYFDNVGGEFSNTVIGQMK | Peptide Atlas |
| PTGR1_HUMAN_184 | 10 | 184 | 193 | LGFDVVFNYK | PRIDE |
| PTGR1_HUMAN_247 | 19 | 247 | 265 | TGPLPPGPPPEIVIYQELR | PRIDE |
| PTGR1_HUMAN_266 | 8 | 266 | 273 | MEAFVVYR | PRIDE |
| PTGR1_HUMAN_59 | 12 | 59 | 70 | EGDTMMGQQVAK | PRIDE |