Annotation Detail for TRIM32
Basic Information Top
| Gene Symbol: | TRIM32 ( BBS11,HT2A,LGMD2H,TATIP ) |
|---|---|
| Gene Full Name: | tripartite motif-containing 32 |
| Band: | 9q33.1 |
| Quick Links | Entrez ID:22954; OMIM: 602290; Uniprot ID:TRI32_HUMAN; ENSEMBL ID: ENSG00000119401; HGNC ID: 16380 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.591910
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 1 / 70761 | 14 |  |
| blastocyst | 1 / 62319 | 16 | |
| fetus | 14 / 564012 | 24 | |
| neonate | 1 / 31097 | 32 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 55 / 1939121 | 28 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 1 / 12794 | 78 |  |
| bladder carcinoma | 2 / 17475 | 114 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 4 / 82823 | 48 | |
| colorectal tumor | 4 / 114246 | 35 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 3 / 119369 | 25 | |
| germ cell tumor | 3 / 263845 | 11 | |
| glioma | 4 / 106883 | 37 | |
| head and neck tumor | 1 / 136302 | 7 |  |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 1 / 103127 | 9 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 2 / 97250 | 20 | |
| normal | 76 / 3360307 | 22 | |
| ovarian tumor | 2 / 76682 | 26 | |
| pancreatic tumor | 1 / 104616 | 9 | |
| primitive neuroectodermal tumor of the CNS | 6 / 125680 | 47 | |
| prostate cancer | 1 / 102680 | 9 | |
| retinoblastoma | 3 / 46356 | 64 | |
| skin tumor | 6 / 124949 | 48 | |
| soft tissue/muscle tissue tumor | 5 / 125191 | 39 | |
| uterine tumor | 3 / 90257 | 33 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 1 / 40015 | 24 | |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 1 / 71655 | 13 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 22 / 1100989 | 19 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 3 / 149255 | 20 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 2 / 215722 | 9 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 7 / 211054 | 33 | |
| heart | 4 / 89626 | 44 | |
| intestine | 6 / 234472 | 25 | |
| kidney | 2 / 211777 | 9 | |
| larynx | 0 / 24145 | 0 | |
| liver | 0 / 207743 | 0 | |
| lung | 15 / 336974 | 44 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 1 / 153271 | 6 | |
| mouth | 1 / 67052 | 14 | |
| muscle | 3 / 107715 | 27 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 4 / 102051 | 39 | |
| pancreas | 1 / 214812 | 4 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 12 / 280825 | 42 | |
| prostate | 5 / 189345 | 26 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 11 / 210574 | 52 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 3 / 96619 | 31 | |
| testis | 4 / 330442 | 12 | |
| thymus | 1 / 81131 | 12 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 1 / 13680 | 73 | |
| uterus | 12 / 232878 | 51 | |
| vascular | 0 / 51780 | 0 |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 203846_at
| Cell line | Expression level | Expression bar |
|---|---|---|
| ||
| 721_B_lymphoblasts | 10.55 | |
| Adipocyte | 6.45 | |
| AdrenalCortex | 6.7 | |
| Adrenalgland | 5.7 | |
| Amygdala | 7.1 | |
| Appendix | 6.45 | |
| AtrioventricularNode | 4.8 | |
| BDCA4+_DentriticCells | 7.2 | |
| Bonemarrow | 6.3 | |
| BronchialEpithelialCells | 15.55 | |
| CD105+_Endothelial | 6.05 | |
| CD14+_Monocytes | 6.2 | |
| CD19+_BCells(neg._sel.) | 6.75 | |
| CD33+_Myeloid | 7.6 | |
| CD34+ | 10.4 | |
| CD4+_Tcells | 7.25 | |
| CD56+_NKCells | 8.45 | |
| CD71+_EarlyErythroid | 5.15 | |
| CD8+_Tcells | 6.55 | |
| CardiacMyocytes | 13.15 | |
| Caudatenucleus | 5.85 | |
| Cerebellum | 51.9 | |
| CerebellumPeduncles | 35.15 | |
| CiliaryGanglion | 5.75 | |
| CingulateCortex | 6.65 | |
| Colorectaladenocarcinoma | 6.55 | |
| DorsalRootGanglion | 4.6 | |
| FetalThyroid | 6.3 | |
| Fetalbrain | 7.45 | |
| Fetalliver | 5.55 | |
| Fetallung | 5.5 | |
| GlobusPallidus | 5.45 | |
| Heart | 6.95 | |
| Hypothalamus | 7.2 | |
| Kidney | 5.2 | |
| Leukemia_chronicMyelogenousK-562 | 5.45 | |
| Leukemia_promyelocytic-HL-60 | 6 | |
| Leukemialymphoblastic(MOLT-4) | 9 | |
| Liver | 8.5 | |
| Lung | 7.85 | |
| Lymphnode | 5.75 | |
| Lymphoma_burkitts(Daudi) | 10.75 | |
| Lymphoma_burkitts(Raji) | 11.5 | |
| MedullaOblongata | 5.95 | |
| OccipitalLobe | 5.9 | |
| OlfactoryBulb | 4.9 | |
| Ovary | 4.25 | |
| Pancreas | 5.15 | |
| PancreaticIslet | 7.05 | |
| ParietalLobe | 6.85 | |
| Pituitary | 7.6 | |
| Placenta | 6.8 | |
| Pons | 6.25 | |
| PrefrontalCortex | 8.35 | |
| Prostate | 7.8 | |
| Salivarygland | 4.75 | |
| SkeletalMuscle | 7.35 | |
| Skin | 4.55 | |
| SmoothMuscle | 9 | |
| Spinalcord | 7 | |
| SubthalamicNucleus | 5.9 | |
| SuperiorCervicalGanglion | 11.85 | |
| TemporalLobe | 6 | |
| Testis | 5.9 | |
| TestisGermCell | 5.55 | |
| TestisIntersitial | 5.45 | |
| TestisLeydigCell | 6.45 | |
| TestisSeminiferousTubule | 5.55 | |
| Thalamus | 6.75 | |
| Thymus | 5.25 | |
| Thyroid | 10.7 | |
| Tongue | 6.25 | |
| Tonsil | 8.1 | |
| Trachea | 5.55 | |
| TrigeminalGanglion | 6.45 | |
| Uterus | 7.55 | |
| UterusCorpus | 5.8 | |
| WholeBlood | 8.5 | |
| Wholebrain | 32.7 | |
| colon | 6.65 | |
| pineal_day | 10.1 | |
| pineal_night | 8.08 | |
| retina | 22.2 | |
| small_intestine | 6.45 | |
- Probe name: A_23_P112311
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 5.89 ± 0.3 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 5.62 ± 0.35 | |
| Basal Part of Pons | 6.09 ± 0.21 | |
| Cerebellar Cortex | 6.35 ± 0.21 | |
| Cerebellar Nuclei | 5.75 ± 0.65 | |
| Claustrum | 6.16 ± 0.48 | |
| Epithalamus | 5.36 ± 0.42 | |
| Frontal Lobe | 5.91 ± 0.46 | |
| Globus Pallidus | 4.83 ± 0.36 | |
| Hypothalamus | 5.67 ± 0.33 | |
| Insula | 6.03 ± 0.36 | |
| Limbic Lobe | 5.99 ± 0.58 | |
| Mesencephalon | 5.83 ± 0.54 | |
| Myelencephalon | 5.66 ± 0.54 | |
| Occipital Lobe | 5.72 ± 0.49 | |
| Parietal Lobe | 5.83 ± 0.49 | |
| Pontine Tegmentum | 5.74 ± 0.57 | |
| Striatum | 5.04 ± 0.45 | |
| Subthalamus | 5.77 ± 0.63 | |
| Temporal Lobe | 5.93 ± 0.39 | |
| Thalamus | 5.64 ± 0.48 | |
| White Matter | 4.39 ± 0.5 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Trim32 | CB | Cerebellum | 100 | |
| 100 | | |||
| Trim32 | CTX | Cerebral cortex | 100 | |
| 100 | | |||
| Trim32 | HIP | Hippocampal region | 100 | |
| 100 | | |||
| Trim32 | HPF | Hippocampal formation | 100 | |
| 100 | | |||
| Trim32 | HY | Hypothalamus | 100 | |
| 99.36 | | |||
| Trim32 | LSX | Lateral septal complex | 100 | |
| 86.75 | | |||
| Trim32 | MB | Midbrain | 100 | |
| 100 | | |||
| Trim32 | MY | Medulla | 100 | |
| 100 | | |||
| Trim32 | OLF | Olfactory bulb | 100 | |
| 100 | | |||
| Trim32 | P | Pons | 100 | |
| 100 | | |||
| Trim32 | PAL | Pallidum | 100 | |
| 100 | | |||
| Trim32 | RHP | Retrohippocampal region | 100 | |
| 100 | | |||
| Trim32 | sAMY | Striatum-like amygdalar nuclei | 100 | |
| 100 | | |||
| Trim32 | STR | Striatum | 100 | |
| 97.55 | | |||
| Trim32 | STRd | Striatum dorsal region | 100 | |
| 94.57 | | |||
| Trim32 | STRv | Striatum ventral region | 100 | |
| 100 | | |||
| Trim32 | TH | Thalamus | 100 | |
| 100 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00503308 | 24 | 248 | 271 | QADVALLEETADEEEPELTASLPR | Peptide Atlas |
| TRI32_HUMAN_2 | 14 | 2 | 15 | AAAAASHLNLDALR | PRIDE |
| TRI32_HUMAN_324 | 14 | 324 | 337 | EMDMSPEEVVASPR | PRIDE |