AutismKB 2.0

Annotation Detail for NINL


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Basic Information Top
Gene Symbol:NINL ( FLJ11792,KIAA0980,NLP,dJ691N24.1 )
Gene Full Name: ninein-like
Band: 20p11.21
Quick LinksEntrez ID:22981; OMIM: 609580; Uniprot ID:NINL_HUMAN; ENSEMBL ID: ENSG00000101004; HGNC ID: 29163
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body4 / 7076156
blastocyst3 / 6231948
fetus18 / 56401231
neonate0 / 310970 
infant0 / 236200 
juvenile3 / 5555653
adult48 / 193912124
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma3 / 8282336
colorectal tumor0 / 1142460 
esophageal tumor1 / 1729057
gastrointestinal tumor2 / 11936916
germ cell tumor7 / 26384526
glioma0 / 1068830 
head and neck tumor3 / 13630222
kidney tumor0 / 689590 
leukemia0 / 958420 
liver tumor11 / 96359114
lung tumor1 / 1031279
lymphoma0 / 717550 
non-neoplasia2 / 9725020
normal73 / 336030721
ovarian tumor0 / 766820 
pancreatic tumor11 / 104616105
primitive neuroectodermal tumor of the CNS4 / 12568031
prostate cancer0 / 1026800 
retinoblastoma3 / 4635664
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor3 / 9025733
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue2 / 13106152
adrenal gland5 / 33197150
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone0 / 716550 
bone marrow1 / 4880120
brain19 / 110098917
cervix0 / 481710 
connective tissue5 / 14925533
ear0 / 162120 
embryonic tissue13 / 21572260
esophagus1 / 2020949
eye4 / 21105418
heart5 / 8962655
intestine0 / 2344720 
kidney6 / 21177728
larynx1 / 2414541
liver12 / 20774357
lung17 / 33697450
lymph0 / 442700 
lymph node0 / 916100 
mammary gland0 / 1532710 
mouth1 / 6705214
muscle0 / 1077150 
nerve4 / 15768253
ovary1 / 1020519
pancreas14 / 21481265
parathyroid4 / 20539194
pharynx0 / 413280 
pituitary gland1 / 1658560
placenta0 / 2808250 
prostate1 / 1893455
salivary gland0 / 201550 
skin0 / 2105740 
spleen1 / 5395218
stomach2 / 9661920
testis11 / 33044233
thymus3 / 8113136
thyroid1 / 4747321
tonsil0 / 169990 
trachea1 / 5241319
umbilical cord0 / 136800 
uterus3 / 23287812
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 207705_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts164.4
Adipocyte4.15
AdrenalCortex4.3
Adrenalgland3.45
Amygdala4.7
Appendix7.2
AtrioventricularNode3.1
BDCA4+_DentriticCells4.15
Bonemarrow4
BronchialEpithelialCells3.95
CD105+_Endothelial4.15
CD14+_Monocytes4.25
CD19+_BCells(neg._sel.)4.3
CD33+_Myeloid5
CD34+5.15
CD4+_Tcells4.35
CD56+_NKCells4.9
CD71+_EarlyErythroid3.8
CD8+_Tcells3.85
CardiacMyocytes5.2
Caudatenucleus3.65
Cerebellum3.3
CerebellumPeduncles4.85
CiliaryGanglion2.8
CingulateCortex4.15
Colorectaladenocarcinoma4.2
DorsalRootGanglion3.1
FetalThyroid5.05
Fetalbrain21.4
Fetalliver3.55
Fetallung8.75
GlobusPallidus2.95
Heart5.15
Hypothalamus7.15
Kidney4.7
Leukemia_chronicMyelogenousK-5623.7
Leukemia_promyelocytic-HL-603.55
Leukemialymphoblastic(MOLT-4)71.3
Liver5.35
Lung4.45
Lymphnode3.5
Lymphoma_burkitts(Daudi)5.15
Lymphoma_burkitts(Raji)5.7
MedullaOblongata3.65
OccipitalLobe3.65
OlfactoryBulb3.9
Ovary2.7
Pancreas3.25
PancreaticIslet4.35
ParietalLobe4.25
Pituitary4.85
Placenta4.2
Pons3.9
PrefrontalCortex5.05
Prostate8.35
Salivarygland3.25
SkeletalMuscle4.5
Skin3.1
SmoothMuscle6.35
Spinalcord5.95
SubthalamicNucleus3.7
SuperiorCervicalGanglion4.6
TemporalLobe3.7
Testis3.8
TestisGermCell9.8
TestisIntersitial3.4
TestisLeydigCell4
TestisSeminiferousTubule3.7
Thalamus4.15
Thymus28.5
Thyroid14.75
Tongue4
Tonsil3.9
Trachea3.4
TrigeminalGanglion4.05
Uterus4.8
UterusCorpus5.15
WholeBlood4.4
Wholebrain3.45
colon4.05
pineal_day13.38
pineal_night24.4
retina9.775
small_intestine3.9
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_15391_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala2.98 ± 0.93
Basal Forebrain3.43 ± 0.49
Basal Part of Pons2.68 ± 0.72
Cerebellar Cortex3.29 ± 0.42
Cerebellar Nuclei2.92 ± 0.45
Claustrum3.04 ± 0.64
Epithalamus3.26 ± 0.45
Frontal Lobe2.74 ± 0.61
Globus Pallidus3.91 ± 0.66
Hypothalamus3.02 ± 0.59
Insula2.39 ± 0.75
Limbic Lobe2.69 ± 0.77
Mesencephalon3.2 ± 0.66
Myelencephalon2.88 ± 0.74
Occipital Lobe3.31 ± 0.65
Parietal Lobe2.92 ± 0.75
Pontine Tegmentum2.94 ± 0.65
Striatum3.29 ± 0.71
Subthalamus2.58 ± 0.29
Temporal Lobe2.61 ± 0.77
Thalamus3.04 ± 0.54
White Matter3.57 ± 0.28
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
4930519N13RikCBCerebellum3.23
3.32
4930519N13RikCTXCerebral cortex0.3
0.46
4930519N13RikHIPHippocampal region0.28
0.43
4930519N13RikHPFHippocampal formation0.24
0.37
4930519N13RikHYHypothalamus0.08
0.11
4930519N13RikLSXLateral septal complex0
0
4930519N13RikMBMidbrain0.53
1.33
4930519N13RikMYMedulla0.75
1.61
4930519N13RikOLFOlfactory bulb0.73
0.79
4930519N13RikPPons0.16
0.28
4930519N13RikPALPallidum1.17
1.75
4930519N13RikRHPRetrohippocampal region0.11
0.13
4930519N13RiksAMYStriatum-like amygdalar nuclei0.06
0.05
4930519N13RikSTRStriatum0.06
0.08
4930519N13RikSTRdStriatum dorsal region0.08
0.11
4930519N13RikSTRvStriatum ventral region0.03
0.02
4930519N13RikTHThalamus0.27
0.39
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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