AutismKB 2.0

Annotation Detail for TTC39A


View Evidences View Variants View Annotations
Basic Information Top
Gene Symbol:TTC39A ( C1orf34,DEME-6,KIAA0452 )
Gene Full Name: tetratricopeptide repeat domain 39A
Band: 1p32.3
Quick LinksEntrez ID:22996; OMIM: NA; Uniprot ID:TT39A_HUMAN; ENSEMBL ID: ENSG00000085831; HGNC ID: 18657
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus3 / 5640125
neonate0 / 310970 
infant0 / 236200 
juvenile2 / 5555635
adult50 / 193912125
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor11 / 94178116
cervical tumor0 / 343660 
chondrosarcoma1 / 8282312
colorectal tumor8 / 11424670
esophageal tumor0 / 172900 
gastrointestinal tumor5 / 11936941
germ cell tumor5 / 26384518
glioma0 / 1068830 
head and neck tumor1 / 1363027
kidney tumor1 / 6895914
leukemia0 / 958420 
liver tumor1 / 9635910
lung tumor6 / 10312758
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal77 / 336030722
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS3 / 12568023
prostate cancer4 / 10268038
retinoblastoma0 / 463560 
skin tumor9 / 12494972
soft tissue/muscle tissue tumor1 / 1251917
uterine tumor1 / 9025711
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland1 / 3319730
ascites1 / 4001524
bladder1 / 2975733
blood0 / 1234780 
bone0 / 716550 
bone marrow0 / 488010 
brain12 / 110098910
cervix0 / 481710 
connective tissue2 / 14925513
ear0 / 162120 
embryonic tissue1 / 2157224
esophagus0 / 202090 
eye3 / 21105414
heart0 / 896260 
intestine15 / 23447263
kidney8 / 21177737
larynx0 / 241450 
liver2 / 2077439
lung10 / 33697429
lymph0 / 442700 
lymph node2 / 9161021
mammary gland13 / 15327184
mouth1 / 6705214
muscle1 / 1077159
nerve0 / 157680 
ovary1 / 1020519
pancreas5 / 21481223
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland1 / 1658560
placenta3 / 28082510
prostate11 / 18934558
salivary gland0 / 201550 
skin9 / 21057442
spleen0 / 539520 
stomach3 / 9661931
testis48 / 330442145
thymus1 / 8113112
thyroid0 / 474730 
tonsil0 / 169990 
trachea1 / 5241319
umbilical cord0 / 136800 
uterus1 / 2328784
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 210652_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts5.65
Adipocyte4.4
AdrenalCortex4.9
Adrenalgland3.85
Amygdala4.8
Appendix6.45
AtrioventricularNode9.8
BDCA4+_DentriticCells123.4
Bonemarrow4.6
BronchialEpithelialCells4.25
CD105+_Endothelial4.65
CD14+_Monocytes5.45
CD19+_BCells(neg._sel.)5.05
CD33+_Myeloid5.95
CD34+5.95
CD4+_Tcells5.15
CD56+_NKCells5.15
CD71+_EarlyErythroid48.25
CD8+_Tcells4.55
CardiacMyocytes6.4
Caudatenucleus4
Cerebellum3.75
CerebellumPeduncles5.25
CiliaryGanglion3.3
CingulateCortex4.8
Colorectaladenocarcinoma4.7
DorsalRootGanglion3.7
FetalThyroid4.65
Fetalbrain4.6
Fetalliver3.95
Fetallung3.7
GlobusPallidus3.5
Heart6.4
Hypothalamus5.6
Kidney3.8
Leukemia_chronicMyelogenousK-5624.05
Leukemia_promyelocytic-HL-603.9
Leukemialymphoblastic(MOLT-4)3.7
Liver6.2
Lung5.3
Lymphnode3.7
Lymphoma_burkitts(Daudi)5.8
Lymphoma_burkitts(Raji)6.7
MedullaOblongata4
OccipitalLobe4.15
OlfactoryBulb3.65
Ovary3.1
Pancreas5.85
PancreaticIslet36.65
ParietalLobe4.95
Pituitary5.3
Placenta4.5
Pons4.4
PrefrontalCortex5.6
Prostate59.85
Salivarygland3.7
SkeletalMuscle5.55
Skin3.85
SmoothMuscle5
Spinalcord4.95
SubthalamicNucleus4.2
SuperiorCervicalGanglion5.5
TemporalLobe4.25
Testis21.2
TestisGermCell26.6
TestisIntersitial17.2
TestisLeydigCell6.6
TestisSeminiferousTubule17.6
Thalamus5
Thymus3.4
Thyroid5.85
Tongue4.65
Tonsil4.35
Trachea3.95
TrigeminalGanglion11.9
Uterus4
UterusCorpus4.2
WholeBlood5.1
Wholebrain3.75
colon62.05
pineal_day15.42
pineal_night6.76
retina6.75
small_intestine4.8
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P160214
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala3.01 ± 0.88
Basal Forebrain3.3 ± 0.55
Basal Part of Pons3.18 ± 0.42
Cerebellar Cortex2.7 ± 0.6
Cerebellar Nuclei4.41 ± 0.48
Claustrum3.23 ± 0.58
Epithalamus3.09 ± 0.74
Frontal Lobe3.79 ± 0.88
Globus Pallidus4.11 ± 0.77
Hypothalamus4.46 ± 0.55
Insula3.12 ± 0.83
Limbic Lobe2.81 ± 0.74
Mesencephalon3.6 ± 0.83
Myelencephalon3.38 ± 0.84
Occipital Lobe3.31 ± 0.81
Parietal Lobe3.8 ± 0.8
Pontine Tegmentum3.76 ± 1.02
Striatum3.37 ± 0.68
Subthalamus3.24 ± 0.21
Temporal Lobe3.09 ± 0.83
Thalamus4.17 ± 0.83
White Matter2.33 ± 0.78
Mouse Brain ISH
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


Copyright © 2017, Center for Bioinformatics , Peking University | All Rights Reserved