AutismKB 2.0

Annotation Detail for PALLD


View Evidences View Variants View Annotations
Basic Information Top
Gene Symbol:PALLD ( CGI151,FLJ22190,FLJ38193,FLJ39139,FLJ61376,KIAA0992,MYN,PNCA1,SIH002 )
Gene Full Name: palladin, cytoskeletal associated protein
Band: 4q32.3
Quick LinksEntrez ID:23022; OMIM: 608092; Uniprot ID:PALLD_HUMAN; ENSEMBL ID: ENSG00000129116; HGNC ID: 17068
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body24 / 70761339
blastocyst4 / 6231964
fetus75 / 564012132
neonate8 / 31097257
infant0 / 236200 
juvenile2 / 5555635
adult262 / 1939121135
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor11 / 94178116
cervical tumor3 / 3436687
chondrosarcoma30 / 82823362
colorectal tumor7 / 11424661
esophageal tumor3 / 17290173
gastrointestinal tumor17 / 119369142
germ cell tumor13 / 26384549
glioma8 / 10688374
head and neck tumor10 / 13630273
kidney tumor9 / 68959130
leukemia4 / 9584241
liver tumor4 / 9635941
lung tumor8 / 10312777
lymphoma1 / 7175513
non-neoplasia8 / 9725082
normal421 / 3360307125
ovarian tumor10 / 76682130
pancreatic tumor7 / 10461666
primitive neuroectodermal tumor of the CNS3 / 12568023
prostate cancer3 / 10268029
retinoblastoma0 / 463560 
skin tumor9 / 12494972
soft tissue/muscle tissue tumor2 / 12519115
uterine tumor20 / 90257221
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue6 / 13106457
adrenal gland4 / 33197120
ascites3 / 4001574
bladder1 / 2975733
blood1 / 1234788
bone22 / 71655307
bone marrow8 / 48801163
brain63 / 110098957
cervix3 / 4817162
connective tissue24 / 149255160
ear3 / 16212185
embryonic tissue36 / 215722166
esophagus3 / 20209148
eye20 / 21105494
heart30 / 89626334
intestine30 / 234472127
kidney23 / 211777108
larynx1 / 2414541
liver9 / 20774343
lung43 / 336974127
lymph0 / 442700 
lymph node9 / 9161098
mammary gland31 / 153271202
mouth7 / 67052104
muscle10 / 10771592
nerve1 / 1576863
ovary8 / 10205178
pancreas17 / 21481279
parathyroid6 / 20539292
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta32 / 280825113
prostate18 / 18934595
salivary gland0 / 201550 
skin23 / 210574109
spleen2 / 5395237
stomach22 / 96619227
testis28 / 33044284
thymus4 / 8113149
thyroid4 / 4747384
tonsil0 / 169990 
trachea8 / 52413152
umbilical cord8 / 13680584
uterus74 / 232878317
vascular12 / 51780231
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 200906_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts7.75
Adipocyte73.95
AdrenalCortex6.6
Adrenalgland5.35
Amygdala6.75
Appendix6.4
AtrioventricularNode4.75
BDCA4+_DentriticCells6.15
Bonemarrow5.95
BronchialEpithelialCells29.9
CD105+_Endothelial6.35
CD14+_Monocytes6.8
CD19+_BCells(neg._sel.)6.15
CD33+_Myeloid7.45
CD34+7.35
CD4+_Tcells6.3
CD56+_NKCells7.6
CD71+_EarlyErythroid5.65
CD8+_Tcells5.2
CardiacMyocytes19.6
Caudatenucleus5.6
Cerebellum5.1
CerebellumPeduncles6.9
CiliaryGanglion4.4
CingulateCortex6.45
Colorectaladenocarcinoma6
DorsalRootGanglion4.75
FetalThyroid10.6
Fetalbrain6.35
Fetalliver5.35
Fetallung7.5
GlobusPallidus4.5
Heart8.95
Hypothalamus6.7
Kidney5.05
Leukemia_chronicMyelogenousK-5624.95
Leukemia_promyelocytic-HL-605.55
Leukemialymphoblastic(MOLT-4)6.65
Liver8.3
Lung16.8
Lymphnode6
Lymphoma_burkitts(Daudi)7.75
Lymphoma_burkitts(Raji)8.8
MedullaOblongata5.8
OccipitalLobe5.6
OlfactoryBulb5.2
Ovary5.45
Pancreas5
PancreaticIslet8.05
ParietalLobe6.7
Pituitary6.95
Placenta12.3
Pons6.05
PrefrontalCortex7.65
Prostate11.9
Salivarygland5
SkeletalMuscle8.9
Skin4.8
SmoothMuscle22.35
Spinalcord6.65
SubthalamicNucleus5.6
SuperiorCervicalGanglion7.05
TemporalLobe5.8
Testis10.5
TestisGermCell22.65
TestisIntersitial18.05
TestisLeydigCell17.85
TestisSeminiferousTubule13.3
Thalamus5.95
Thymus5.05
Thyroid10
Tongue9.45
Tonsil6.15
Trachea6.8
TrigeminalGanglion8
Uterus104.2
UterusCorpus16.55
WholeBlood6.65
Wholebrain4.8
colon37.4
pineal_day7.5
pineal_night6.88
retina8.15
small_intestine12.85
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_15064_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala7.24 ± 0.33
Basal Forebrain7.23 ± 0.25
Basal Part of Pons5.75 ± 0.41
Cerebellar Cortex6.01 ± 0.3
Cerebellar Nuclei5.89 ± 0.51
Claustrum7.05 ± 0.43
Epithalamus7.25 ± 0.31
Frontal Lobe6.44 ± 0.43
Globus Pallidus7.66 ± 0.4
Hypothalamus6.57 ± 0.45
Insula6.55 ± 0.46
Limbic Lobe6.7 ± 0.54
Mesencephalon6.77 ± 0.5
Myelencephalon6.66 ± 0.53
Occipital Lobe6.33 ± 0.42
Parietal Lobe6.55 ± 0.6
Pontine Tegmentum6.67 ± 0.39
Striatum7.47 ± 0.41
Subthalamus6.02 ± 0.53
Temporal Lobe6.55 ± 0.4
Thalamus6.37 ± 0.31
White Matter6.78 ± 0.45
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
PalldCBCerebellum11.51
11.47
PalldCTXCerebral cortex1.02
0.89
PalldHIPHippocampal region1.95
3.1
PalldHPFHippocampal formation2.43
3.58
PalldHYHypothalamus0.92
0.51
PalldLSXLateral septal complex0.8
0.35
PalldMBMidbrain2.01
2.13
PalldMYMedulla3.23
2.73
PalldOLFOlfactory bulb2.09
2.51
PalldPPons2.3
2.64
PalldPALPallidum1.13
0.86
PalldRHPRetrohippocampal region2.86
3.6
PalldsAMYStriatum-like amygdalar nuclei1.18
1.11
PalldSTRStriatum0.86
0.62
PalldSTRdStriatum dorsal region0.67
0.52
PalldSTRvStriatum ventral region1.32
0.69
PalldTHThalamus7.99
3.1
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PALLD_HUMAN_0 0 0 0 DAGIYTCIATNR PRIDE
PAp00009772 12 978 989 DAGIYTCIATNR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


Copyright © 2017, Center for Bioinformatics , Peking University | All Rights Reserved