Annotation Detail for ENDOD1
Basic Information Top
| Gene Symbol: | ENDOD1 ( KIAA0830,MGC88092 ) |
|---|---|
| Gene Full Name: | endonuclease domain containing 1 |
| Band: | 11q21 |
| Quick Links | Entrez ID:23052; OMIM: NA; Uniprot ID:ENDD1_HUMAN; ENSEMBL ID: ENSG00000149218; HGNC ID: 29129 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.167115
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 4 / 70761 | 56 |  |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 21 / 564012 | 37 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 84 / 1939121 | 43 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 1 / 17475 | 57 | |
| breast (mammary gland) tumor | 3 / 94178 | 31 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 8 / 82823 | 96 | |
| colorectal tumor | 2 / 114246 | 17 | |
| esophageal tumor | 1 / 17290 | 57 | |
| gastrointestinal tumor | 2 / 119369 | 16 | |
| germ cell tumor | 4 / 263845 | 15 | |
| glioma | 6 / 106883 | 56 | |
| head and neck tumor | 3 / 136302 | 22 | |
| kidney tumor | 5 / 68959 | 72 | |
| leukemia | 1 / 95842 | 10 |  |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 1 / 103127 | 9 | |
| lymphoma | 1 / 71755 | 13 | |
| non-neoplasia | 3 / 97250 | 30 | |
| normal | 165 / 3360307 | 49 | |
| ovarian tumor | 2 / 76682 | 26 | |
| pancreatic tumor | 1 / 104616 | 9 | |
| primitive neuroectodermal tumor of the CNS | 1 / 125680 | 7 | |
| prostate cancer | 14 / 102680 | 136 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 5 / 124949 | 40 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 5 / 33197 | 150 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 2 / 29757 | 67 | |
| blood | 1 / 123478 | 8 | |
| bone | 3 / 71655 | 41 | |
| bone marrow | 1 / 48801 | 20 | |
| brain | 72 / 1100989 | 65 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 8 / 149255 | 53 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 6 / 215722 | 27 | |
| esophagus | 1 / 20209 | 49 | |
| eye | 9 / 211054 | 42 | |
| heart | 3 / 89626 | 33 | |
| intestine | 5 / 234472 | 21 | |
| kidney | 20 / 211777 | 94 | |
| larynx | 0 / 24145 | 0 | |
| liver | 1 / 207743 | 4 | |
| lung | 9 / 336974 | 26 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 5 / 91610 | 54 | |
| mammary gland | 4 / 153271 | 26 | |
| mouth | 1 / 67052 | 14 | |
| muscle | 3 / 107715 | 27 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 2 / 102051 | 19 | |
| pancreas | 4 / 214812 | 18 | |
| parathyroid | 1 / 20539 | 48 | |
| pharynx | 1 / 41328 | 24 | |
| pituitary gland | 3 / 16585 | 180 | |
| placenta | 6 / 280825 | 21 | |
| prostate | 27 / 189345 | 142 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 14 / 210574 | 66 | |
| spleen | 2 / 53952 | 37 | |
| stomach | 2 / 96619 | 20 | |
| testis | 3 / 330442 | 9 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 2 / 47473 | 42 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 5 / 232878 | 21 | |
| vascular | 0 / 51780 | 0 |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 212570_at
| Cell line | Expression level | Expression bar |
|---|---|---|
| ||
| 721_B_lymphoblasts | 10 | |
| Adipocyte | 4.95 | |
| AdrenalCortex | 5.1 | |
| Adrenalgland | 4.1 | |
| Amygdala | 6.7 | |
| Appendix | 4.95 | |
| AtrioventricularNode | 3.75 | |
| BDCA4+_DentriticCells | 8.4 | |
| Bonemarrow | 5.05 | |
| BronchialEpithelialCells | 5 | |
| CD105+_Endothelial | 12.05 | |
| CD14+_Monocytes | 5.1 | |
| CD19+_BCells(neg._sel.) | 19.6 | |
| CD33+_Myeloid | 7.85 | |
| CD34+ | 27.85 | |
| CD4+_Tcells | 5.5 | |
| CD56+_NKCells | 6.25 | |
| CD71+_EarlyErythroid | 101.8 | |
| CD8+_Tcells | 5 | |
| CardiacMyocytes | 6.2 | |
| Caudatenucleus | 5.3 | |
| Cerebellum | 4 | |
| CerebellumPeduncles | 5.55 | |
| CiliaryGanglion | 3.45 | |
| CingulateCortex | 5.05 | |
| Colorectaladenocarcinoma | 5 | |
| DorsalRootGanglion | 3.85 | |
| FetalThyroid | 4.9 | |
| Fetalbrain | 5 | |
| Fetalliver | 4.1 | |
| Fetallung | 4.15 | |
| GlobusPallidus | 3.6 | |
| Heart | 6.2 | |
| Hypothalamus | 7.85 | |
| Kidney | 3.9 | |
| Leukemia_chronicMyelogenousK-562 | 4.5 | |
| Leukemia_promyelocytic-HL-60 | 4.4 | |
| Leukemialymphoblastic(MOLT-4) | 4 | |
| Liver | 6.45 | |
| Lung | 6.5 | |
| Lymphnode | 4.15 | |
| Lymphoma_burkitts(Daudi) | 6.35 | |
| Lymphoma_burkitts(Raji) | 6.9 | |
| MedullaOblongata | 6.3 | |
| OccipitalLobe | 5.05 | |
| OlfactoryBulb | 4.85 | |
| Ovary | 3.35 | |
| Pancreas | 3.8 | |
| PancreaticIslet | 5.25 | |
| ParietalLobe | 5.3 | |
| Pituitary | 5.8 | |
| Placenta | 4.8 | |
| Pons | 4.75 | |
| PrefrontalCortex | 6.3 | |
| Prostate | 21.2 | |
| Salivarygland | 3.7 | |
| SkeletalMuscle | 6.65 | |
| Skin | 4.2 | |
| SmoothMuscle | 5.5 | |
| Spinalcord | 5.35 | |
| SubthalamicNucleus | 4.45 | |
| SuperiorCervicalGanglion | 5.6 | |
| TemporalLobe | 4.55 | |
| Testis | 4.3 | |
| TestisGermCell | 4.2 | |
| TestisIntersitial | 4.15 | |
| TestisLeydigCell | 4.65 | |
| TestisSeminiferousTubule | 4.3 | |
| Thalamus | 5.1 | |
| Thymus | 3.7 | |
| Thyroid | 6.8 | |
| Tongue | 4.8 | |
| Tonsil | 4.85 | |
| Trachea | 4.15 | |
| TrigeminalGanglion | 5.25 | |
| Uterus | 4.3 | |
| UterusCorpus | 5.9 | |
| WholeBlood | 5.5 | |
| Wholebrain | 14.8 | |
| colon | 7.05 | |
| pineal_day | 6.26 | |
| pineal_night | 6.32 | |
| retina | 6.1 | |
| small_intestine | 5 | |
- Probe name: CUST_249_PI416408490
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 8.59 ± 0.34 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 9.2 ± 0.33 | |
| Basal Part of Pons | 9.48 ± 0.23 | |
| Cerebellar Cortex | 8.97 ± 0.17 | |
| Cerebellar Nuclei | 9.79 ± 0.42 | |
| Claustrum | 8.93 ± 0.28 | |
| Epithalamus | 8.98 ± 0.45 | |
| Frontal Lobe | 9.07 ± 0.5 | |
| Globus Pallidus | 10.1 ± 0.33 | |
| Hypothalamus | 9.35 ± 0.22 | |
| Insula | 8.65 ± 0.3 | |
| Limbic Lobe | 8.83 ± 0.47 | |
| Mesencephalon | 9.3 ± 0.41 | |
| Myelencephalon | 9.08 ± 0.43 | |
| Occipital Lobe | 9.22 ± 0.41 | |
| Parietal Lobe | 9.05 ± 0.39 | |
| Pontine Tegmentum | 9.12 ± 0.35 | |
| Striatum | 9.24 ± 0.45 | |
| Subthalamus | 9.51 ± 0.27 | |
| Temporal Lobe | 8.84 ± 0.32 | |
| Thalamus | 9.31 ± 0.25 | |
| White Matter | 11 ± 0.41 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Endod1 | CB | Cerebellum | 24.15 | |
| 39.14 | | |||
| Endod1 | CTX | Cerebral cortex | 28.37 | |
| 27.24 | | |||
| Endod1 | HIP | Hippocampal region | 32.01 | |
| 46.13 | | |||
| Endod1 | HPF | Hippocampal formation | 31.9 | |
| 39.12 | | |||
| Endod1 | HY | Hypothalamus | 71.2 | |
| 72.07 | | |||
| Endod1 | LSX | Lateral septal complex | 42.14 | |
| 34.72 | | |||
| Endod1 | MB | Midbrain | 74.73 | |
| 85.02 | | |||
| Endod1 | MY | Medulla | 75.9 | |
| 100 | | |||
| Endod1 | OLF | Olfactory bulb | 24.06 | |
| 21 | | |||
| Endod1 | P | Pons | 82.12 | |
| 100 | | |||
| Endod1 | PAL | Pallidum | 67.23 | |
| 78.82 | | |||
| Endod1 | RHP | Retrohippocampal region | 33.6 | |
| 31.46 | | |||
| Endod1 | sAMY | Striatum-like amygdalar nuclei | 44.28 | |
| 40.09 | | |||
| Endod1 | STR | Striatum | 23.38 | |
| 22 | | |||
| Endod1 | STRd | Striatum dorsal region | 17.82 | |
| 17.45 | | |||
| Endod1 | STRv | Striatum ventral region | 22.05 | |
| 20.72 | | |||
| Endod1 | TH | Thalamus | 44.14 | |
| 45.83 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00000562 | 24 | 185 | 208 | ALTPQCGSGEDLYILTGTVPSDYR | Peptide Atlas |