AutismKB 2.0

Annotation Detail for MYCBP2


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Basic Information Top
Gene Symbol:MYCBP2 ( DKFZp686M08244,FLJ10106,FLJ13826,FLJ21597,FLJ21646,KIAA0916,PAM )
Gene Full Name: MYC binding protein 2
Band: 13q22.3
Quick LinksEntrez ID:23077; OMIM: 610392; Uniprot ID:MYCB2_HUMAN; ENSEMBL ID: ENSG00000005810; HGNC ID: 23386
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body8 / 70761113
blastocyst5 / 6231980
fetus75 / 564012132
neonate0 / 310970 
infant2 / 2362084
juvenile4 / 5555671
adult142 / 193912173
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma1 / 1747557
breast (mammary gland) tumor5 / 9417853
cervical tumor0 / 343660 
chondrosarcoma7 / 8282384
colorectal tumor4 / 11424635
esophageal tumor4 / 17290231
gastrointestinal tumor9 / 11936975
germ cell tumor8 / 26384530
glioma17 / 106883159
head and neck tumor17 / 136302124
kidney tumor3 / 6895943
leukemia7 / 9584273
liver tumor1 / 9635910
lung tumor4 / 10312738
lymphoma4 / 7175555
non-neoplasia9 / 9725092
normal292 / 336030786
ovarian tumor2 / 7668226
pancreatic tumor2 / 10461619
primitive neuroectodermal tumor of the CNS2 / 12568015
prostate cancer5 / 10268048
retinoblastoma0 / 463560 
skin tumor1 / 1249498
soft tissue/muscle tissue tumor3 / 12519123
uterine tumor6 / 9025766
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue2 / 13106152
adrenal gland1 / 3319730
ascites3 / 4001574
bladder0 / 297570 
blood6 / 12347848
bone5 / 7165569
bone marrow3 / 4880161
brain145 / 1100989131
cervix0 / 481710 
connective tissue9 / 14925560
ear1 / 1621261
embryonic tissue16 / 21572274
esophagus4 / 20209197
eye13 / 21105461
heart8 / 8962689
intestine8 / 23447234
kidney13 / 21177761
larynx4 / 24145165
liver3 / 20774314
lung11 / 33697432
lymph4 / 4427090
lymph node18 / 91610196
mammary gland13 / 15327184
mouth10 / 67052149
muscle13 / 107715120
nerve2 / 15768126
ovary2 / 10205119
pancreas4 / 21481218
parathyroid2 / 2053997
pharynx1 / 4132824
pituitary gland1 / 1658560
placenta7 / 28082524
prostate7 / 18934536
salivary gland1 / 2015549
skin3 / 21057414
spleen5 / 5395292
stomach11 / 96619113
testis12 / 33044236
thymus6 / 8113173
thyroid8 / 47473168
tonsil7 / 16999411
trachea6 / 52413114
umbilical cord0 / 136800 
uterus13 / 23287855
vascular3 / 5178057
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 201960_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts683.75
Adipocyte366.55
AdrenalCortex28.1
Adrenalgland8.15
Amygdala887.75
Appendix26.5
AtrioventricularNode13.05
BDCA4+_DentriticCells658
Bonemarrow13.6
BronchialEpithelialCells45.8
CD105+_Endothelial255.5
CD14+_Monocytes550.5
CD19+_BCells(neg._sel.)1310.1
CD33+_Myeloid853.8
CD34+1173.2
CD4+_Tcells798.8
CD56+_NKCells938.55
CD71+_EarlyErythroid11.45
CD8+_Tcells832.5
CardiacMyocytes15.75
Caudatenucleus129.95
Cerebellum25.65
CerebellumPeduncles103.3
CiliaryGanglion15.25
CingulateCortex452.4
Colorectaladenocarcinoma52.8
DorsalRootGanglion33.3
FetalThyroid83.35
Fetalbrain458.45
Fetalliver9.55
Fetallung32.1
GlobusPallidus203.05
Heart18.2
Hypothalamus434
Kidney8.55
Leukemia_chronicMyelogenousK-56215
Leukemia_promyelocytic-HL-60217
Leukemialymphoblastic(MOLT-4)153.4
Liver13.05
Lung18.45
Lymphnode305.8
Lymphoma_burkitts(Daudi)234.05
Lymphoma_burkitts(Raji)53.15
MedullaOblongata290.45
OccipitalLobe309.05
OlfactoryBulb59.65
Ovary10.55
Pancreas110.1
PancreaticIslet56.8
ParietalLobe332.3
Pituitary86.1
Placenta11.25
Pons107.6
PrefrontalCortex1212
Prostate233.4
Salivarygland42.5
SkeletalMuscle16.45
Skin27.4
SmoothMuscle27.75
Spinalcord126.6
SubthalamicNucleus281.15
SuperiorCervicalGanglion26.75
TemporalLobe240
Testis30.35
TestisGermCell127.1
TestisIntersitial39.35
TestisLeydigCell36.25
TestisSeminiferousTubule64.8
Thalamus240.3
Thymus128.35
Thyroid172.1
Tongue113.1
Tonsil268.65
Trachea21.6
TrigeminalGanglion15.35
Uterus174.9
UterusCorpus12.25
WholeBlood186.1
Wholebrain181.9
colon47.4
pineal_day377.18
pineal_night408.06
retina47.125
small_intestine30.5
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_24_P323815
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala10.6 ± 0.22
Basal Forebrain9.89 ± 0.13
Basal Part of Pons10.54 ± 0.23
Cerebellar Cortex10.16 ± 0.14
Cerebellar Nuclei9.92 ± 0.42
Claustrum10.38 ± 0.25
Epithalamus10.07 ± 0.3
Frontal Lobe10.25 ± 0.28
Globus Pallidus9.32 ± 0.3
Hypothalamus9.92 ± 0.3
Insula10.39 ± 0.1
Limbic Lobe10.4 ± 0.32
Mesencephalon10.09 ± 0.35
Myelencephalon10.17 ± 0.37
Occipital Lobe10.35 ± 0.22
Parietal Lobe10.3 ± 0.26
Pontine Tegmentum10.15 ± 0.22
Striatum9.97 ± 0.38
Subthalamus10.32 ± 0.32
Temporal Lobe10.36 ± 0.22
Thalamus10.1 ± 0.2
White Matter9.11 ± 0.28
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Phr1CBCerebellum58.37
69.45
Phr1CTXCerebral cortex100
100
Phr1HPFHippocampal formation100
100
Phr1LSXLateral septal complex100
100
Phr1MBMidbrain100
100
Phr1MYMedulla100
100
Phr1PALPallidum100
100
Phr1RHPRetrohippocampal region100
100
Phr1sAMYStriatum-like amygdalar nuclei100
100
Phr1STRdStriatum dorsal region100
87.78
Phr1THThalamus100
100
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00027742 21 1151 1171 SHAALHILGCLDTLAAMQDLK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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