Annotation Detail for TRIM35
Basic Information Top
| Gene Symbol: | TRIM35 ( HLS5,KIAA1098,MAIR,MGC17233 ) |
|---|---|
| Gene Full Name: | tripartite motif-containing 35 |
| Band: | 8p21.2 |
| Quick Links | Entrez ID:23087; OMIM: NA; Uniprot ID:TRI35_HUMAN; ENSEMBL ID: ENSG00000104228; HGNC ID: 16285 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.104223
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 1 / 70761 | 14 |  |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 13 / 564012 | 23 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 31 / 1939121 | 15 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 6 / 82823 | 72 |  |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 3 / 263845 | 11 | |
| glioma | 2 / 106883 | 18 | |
| head and neck tumor | 2 / 136302 | 14 | |
| kidney tumor | 2 / 68959 | 29 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 2 / 103127 | 19 | |
| lymphoma | 2 / 71755 | 27 | |
| non-neoplasia | 3 / 97250 | 30 | |
| normal | 44 / 3360307 | 13 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 1 / 104616 | 9 |  |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 1 / 46356 | 21 | |
| skin tumor | 2 / 124949 | 16 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 1 / 90257 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 1 / 71655 | 13 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 11 / 1100989 | 9 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 5 / 149255 | 33 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 1 / 215722 | 4 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 3 / 211054 | 14 | |
| heart | 0 / 89626 | 0 | |
| intestine | 2 / 234472 | 8 | |
| kidney | 5 / 211777 | 23 | |
| larynx | 0 / 24145 | 0 | |
| liver | 1 / 207743 | 4 | |
| lung | 8 / 336974 | 23 | |
| lymph | 2 / 44270 | 45 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 0 / 153271 | 0 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 1 / 107715 | 9 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 1 / 102051 | 9 | |
| pancreas | 7 / 214812 | 32 | |
| parathyroid | 1 / 20539 | 48 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 1 / 280825 | 3 | |
| prostate | 0 / 189345 | 0 | |
| salivary gland | 1 / 20155 | 49 | |
| skin | 3 / 210574 | 14 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 1 / 330442 | 3 | |
| thymus | 1 / 81131 | 12 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 1 / 16999 | 58 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 11 / 232878 | 47 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: A_24_P12651
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 6.2 ± 0.61 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 6.12 ± 0.54 | |
| Basal Part of Pons | 6.66 ± 0.39 | |
| Cerebellar Cortex | 5.91 ± 0.6 | |
| Cerebellar Nuclei | 6.45 ± 0.39 | |
| Claustrum | 6.29 ± 0.56 | |
| Epithalamus | 5.53 ± 0.58 | |
| Frontal Lobe | 6.45 ± 0.81 | |
| Globus Pallidus | 6.86 ± 0.75 | |
| Hypothalamus | 5.76 ± 0.59 | |
| Insula | 6.38 ± 0.77 | |
| Limbic Lobe | 6.55 ± 0.74 | |
| Mesencephalon | 6.09 ± 0.62 | |
| Myelencephalon | 6.38 ± 0.78 | |
| Occipital Lobe | 6.31 ± 0.74 | |
| Parietal Lobe | 6.23 ± 0.67 | |
| Pontine Tegmentum | 6.2 ± 0.77 | |
| Striatum | 6.56 ± 0.74 | |
| Subthalamus | 6.01 ± 0.39 | |
| Temporal Lobe | 6.3 ± 0.81 | |
| Thalamus | 6.39 ± 0.54 | |
| White Matter | 6.67 ± 0.63 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Trim35 | CB | Cerebellum | 45.03 | |
| 83.08 | | |||
| Trim35 | CTX | Cerebral cortex | 100 | |
| 100 | | |||
| Trim35 | HIP | Hippocampal region | 100 | |
| 100 | | |||
| Trim35 | HPF | Hippocampal formation | 100 | |
| 100 | | |||
| Trim35 | HY | Hypothalamus | 62.65 | |
| 57.92 | | |||
| Trim35 | LSX | Lateral septal complex | 72.21 | |
| 60.59 | | |||
| Trim35 | MB | Midbrain | 68.09 | |
| 67 | | |||
| Trim35 | MY | Medulla | 75.43 | |
| 91.1 | | |||
| Trim35 | OLF | Olfactory bulb | 100 | |
| 100 | | |||
| Trim35 | P | Pons | 63.13 | |
| 71.97 | | |||
| Trim35 | PAL | Pallidum | 73.49 | |
| 81.14 | | |||
| Trim35 | RHP | Retrohippocampal region | 100 | |
| 100 | | |||
| Trim35 | sAMY | Striatum-like amygdalar nuclei | 100 | |
| 100 | | |||
| Trim35 | STR | Striatum | 100 | |
| 100 | | |||
| Trim35 | STRd | Striatum dorsal region | 100 | |
| 100 | | |||
| Trim35 | STRv | Striatum ventral region | 100 | |
| 85.95 | | |||
| Trim35 | TH | Thalamus | 89.26 | |
| 90.29 | |