AutismKB 2.0

Annotation Detail for SARM1


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Basic Information Top
Gene Symbol:SARM1 ( FLJ36296,KIAA0524,SAMD2,SARM )
Gene Full Name: sterile alpha and TIR motif containing 1
Band: 17q11.2
Quick LinksEntrez ID:23098; OMIM: 607732; Uniprot ID:SARM1_HUMAN; ENSEMBL ID: ENSG00000004139; HGNC ID: 17074
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus21 / 56401237
neonate0 / 310970 
infant1 / 2362042
juvenile0 / 555560 
adult17 / 19391218
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma2 / 8282324
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor2 / 11936916
germ cell tumor1 / 2638453
glioma5 / 10688346
head and neck tumor0 / 1363020 
kidney tumor0 / 689590 
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia2 / 9725020
normal56 / 336030716
ovarian tumor1 / 7668213
pancreatic tumor1 / 1046169
primitive neuroectodermal tumor of the CNS7 / 12568055
prostate cancer0 / 1026800 
retinoblastoma1 / 4635621
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor2 / 9025722
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland1 / 3319730
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone1 / 7165513
bone marrow0 / 488010 
brain39 / 110098935
cervix0 / 481710 
connective tissue3 / 14925520
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus0 / 202090 
eye5 / 21105423
heart2 / 8962622
intestine3 / 23447212
kidney1 / 2117774
larynx0 / 241450 
liver0 / 2077430 
lung1 / 3369742
lymph0 / 442700 
lymph node1 / 9161010
mammary gland0 / 1532710 
mouth0 / 670520 
muscle1 / 1077159
nerve0 / 157680 
ovary1 / 1020519
pancreas1 / 2148124
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta1 / 2808253
prostate1 / 1893455
salivary gland0 / 201550 
skin0 / 2105740 
spleen4 / 5395274
stomach2 / 9661920
testis5 / 33044215
thymus1 / 8113112
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus3 / 23287812
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 213257_at
Cell line Expression level Expression bar
721_B_lymphoblasts10.35
Adipocyte8.9
AdrenalCortex10
Adrenalgland11.65
Amygdala9.25
Appendix9.55
AtrioventricularNode7.25
BDCA4+_DentriticCells4.65
Bonemarrow9.95
BronchialEpithelialCells8.5
CD105+_Endothelial7.7
CD14+_Monocytes5.65
CD19+_BCells(neg._sel.)9.75
CD33+_Myeloid9
CD34+9.95
CD4+_Tcells9.7
CD56+_NKCells10.55
CD71+_EarlyErythroid8.45
CD8+_Tcells8.85
CardiacMyocytes11.3
Caudatenucleus11.4
Cerebellum9.9
CerebellumPeduncles10.5
CiliaryGanglion6.95
CingulateCortex9.25
Colorectaladenocarcinoma9.1
DorsalRootGanglion7.6
FetalThyroid9.05
Fetalbrain9.3
Fetalliver8.45
Fetallung7.55
GlobusPallidus8.5
Heart11.95
Hypothalamus11.9
Kidney11.05
Leukemia_chronicMyelogenousK-5628.15
Leukemia_promyelocytic-HL-608
Leukemialymphoblastic(MOLT-4)7.25
Liver11.85
Lung9.8
Lymphnode8.65
Lymphoma_burkitts(Daudi)11.55
Lymphoma_burkitts(Raji)12.6
MedullaOblongata8.75
OccipitalLobe8.2
OlfactoryBulb7.15
Ovary6.3
Pancreas7.95
PancreaticIslet9.85
ParietalLobe9.6
Pituitary13.25
Placenta9.2
Pons8.7
PrefrontalCortex11.4
Prostate10.5
Salivarygland8.3
SkeletalMuscle10.55
Skin7.05
SmoothMuscle10.05
Spinalcord9.8
SubthalamicNucleus8.25
SuperiorCervicalGanglion11.75
TemporalLobe8.25
Testis7.7
TestisGermCell6.15
TestisIntersitial7.45
TestisLeydigCell8.95
TestisSeminiferousTubule7.75
Thalamus9.2
Thymus7.05
Thyroid11.25
Tongue9.05
Tonsil9.65
Trachea8
TrigeminalGanglion8.95
Uterus7.4
UterusCorpus8.3
WholeBlood9.8
Wholebrain7.45
colon9.1
pineal_day10.3
pineal_night9.1
retina9.9
small_intestine8.6
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_24_P267293
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala6.1 ± 0.2
Basal Forebrain6.13 ± 0.31
Basal Part of Pons5.35 ± 0.28
Cerebellar Cortex6.36 ± 0.31
Cerebellar Nuclei5.15 ± 0.38
Claustrum5.53 ± 0.52
Epithalamus5.7 ± 0.34
Frontal Lobe5.66 ± 0.4
Globus Pallidus5.34 ± 0.31
Hypothalamus5.62 ± 0.4
Insula5.99 ± 0.41
Limbic Lobe6.08 ± 0.51
Mesencephalon5.81 ± 0.48
Myelencephalon5.87 ± 0.51
Occipital Lobe6.3 ± 0.5
Parietal Lobe5.81 ± 0.34
Pontine Tegmentum5.94 ± 0.5
Striatum6.12 ± 0.54
Subthalamus5.9 ± 1.67
Temporal Lobe5.88 ± 0.33
Thalamus5.67 ± 0.35
White Matter5.33 ± 0.48
Mouse Brain ISH
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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