AutismKB 2.0

Annotation Detail for FAM179B


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Basic Information Top
Gene Symbol:FAM179B ( DKFZp686D12126,KIAA0423 )
Gene Full Name: family with sequence similarity 179, member B
Band: 14q21.2
Quick LinksEntrez ID:23116; OMIM: NA; Uniprot ID:F179B_HUMAN; ENSEMBL ID: ENSG00000198718; HGNC ID:
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body3 / 7076142
blastocyst1 / 6231916
fetus16 / 56401228
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult43 / 193912122
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor2 / 9417821
cervical tumor0 / 343660 
chondrosarcoma1 / 8282312
colorectal tumor3 / 11424626
esophageal tumor0 / 172900 
gastrointestinal tumor1 / 1193698
germ cell tumor2 / 2638457
glioma0 / 1068830 
head and neck tumor7 / 13630251
kidney tumor0 / 689590 
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia1 / 9725010
normal95 / 336030728
ovarian tumor1 / 7668213
pancreatic tumor1 / 1046169
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer3 / 10268029
retinoblastoma0 / 463560 
skin tumor3 / 12494924
soft tissue/muscle tissue tumor1 / 1251917
uterine tumor1 / 9025711
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone1 / 7165513
bone marrow0 / 488010 
brain28 / 110098925
cervix0 / 481710 
connective tissue2 / 14925513
ear3 / 16212185
embryonic tissue6 / 21572227
esophagus0 / 202090 
eye9 / 21105442
heart2 / 8962622
intestine6 / 23447225
kidney7 / 21177733
larynx0 / 241450 
liver3 / 20774314
lung4 / 33697411
lymph0 / 442700 
lymph node2 / 9161021
mammary gland5 / 15327132
mouth6 / 6705289
muscle1 / 1077159
nerve0 / 157680 
ovary2 / 10205119
pancreas11 / 21481251
parathyroid2 / 2053997
pharynx1 / 4132824
pituitary gland0 / 165850 
placenta5 / 28082517
prostate3 / 18934515
salivary gland0 / 201550 
skin3 / 21057414
spleen0 / 539520 
stomach0 / 966190 
testis6 / 33044218
thymus0 / 811310 
thyroid2 / 4747342
tonsil0 / 169990 
trachea2 / 5241338
umbilical cord0 / 136800 
uterus4 / 23287817
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 213304_at
Cell line Expression level Expression bar
721_B_lymphoblasts9.35
Adipocyte7.5
AdrenalCortex8.9
Adrenalgland7.4
Amygdala108.8
Appendix9.55
AtrioventricularNode8.3
BDCA4+_DentriticCells13.2
Bonemarrow8.4
BronchialEpithelialCells7.6
CD105+_Endothelial12.7
CD14+_Monocytes8
CD19+_BCells(neg._sel.)14.55
CD33+_Myeloid9.65
CD34+17.8
CD4+_Tcells8.6
CD56+_NKCells9.35
CD71+_EarlyErythroid7.35
CD8+_Tcells7.35
CardiacMyocytes11.65
Caudatenucleus25.15
Cerebellum6.75
CerebellumPeduncles8.05
CiliaryGanglion6
CingulateCortex9.35
Colorectaladenocarcinoma7.75
DorsalRootGanglion7.6
FetalThyroid7.85
Fetalbrain17.8
Fetalliver7.6
Fetallung6.95
GlobusPallidus9.1
Heart13.8
Hypothalamus35.3
Kidney6.85
Leukemia_chronicMyelogenousK-5626.85
Leukemia_promyelocytic-HL-607.1
Leukemialymphoblastic(MOLT-4)6
Liver11.25
Lung8.4
Lymphnode6.6
Lymphoma_burkitts(Daudi)9.95
Lymphoma_burkitts(Raji)11.85
MedullaOblongata13.1
OccipitalLobe41.9
OlfactoryBulb6.25
Ovary5.7
Pancreas6.4
PancreaticIslet9.25
ParietalLobe9.9
Pituitary19.3
Placenta7.35
Pons8
PrefrontalCortex61.4
Prostate9.2
Salivarygland6.55
SkeletalMuscle10.05
Skin6.65
SmoothMuscle9
Spinalcord12.1
SubthalamicNucleus11.2
SuperiorCervicalGanglion10.65
TemporalLobe7.6
Testis6.55
TestisGermCell6.6
TestisIntersitial7.5
TestisLeydigCell8.05
TestisSeminiferousTubule6.3
Thalamus8.8
Thymus5.55
Thyroid41.6
Tongue8
Tonsil7.45
Trachea7.65
TrigeminalGanglion8.85
Uterus9.7
UterusCorpus8.1
WholeBlood8.2
Wholebrain29.3
colon7.75
pineal_day28.48
pineal_night31.04
retina9.975
small_intestine7.45
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_7199_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala6.72 ± 0.28
Basal Forebrain6.33 ± 0.28
Basal Part of Pons6.82 ± 0.39
Cerebellar Cortex6.3 ± 0.24
Cerebellar Nuclei6.17 ± 0.52
Claustrum6.58 ± 0.42
Epithalamus6.72 ± 0.41
Frontal Lobe6.49 ± 0.34
Globus Pallidus6.11 ± 0.28
Hypothalamus6.18 ± 0.21
Insula6.51 ± 0.29
Limbic Lobe6.83 ± 0.34
Mesencephalon6.53 ± 0.39
Myelencephalon6.53 ± 0.39
Occipital Lobe7.01 ± 0.31
Parietal Lobe6.69 ± 0.34
Pontine Tegmentum6.5 ± 0.34
Striatum7.12 ± 0.19
Subthalamus6.04 ± 1.1
Temporal Lobe6.52 ± 0.37
Thalamus6.56 ± 0.21
White Matter6.96 ± 0.39
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
A430041B07RikCBCerebellum13.42
16.97
A430041B07RikCTXCerebral cortex38.84
30.8
A430041B07RikHIPHippocampal region32.3
44.69
A430041B07RikHPFHippocampal formation32.58
36.97
A430041B07RikHYHypothalamus5.68
4.34
A430041B07RikLSXLateral septal complex3.06
2.21
A430041B07RikMBMidbrain15.83
14.08
A430041B07RikMYMedulla14.14
14.44
A430041B07RikOLFOlfactory bulb26.97
21.39
A430041B07RikPPons11.02
11.49
A430041B07RikPALPallidum6.49
5.49
A430041B07RikRHPRetrohippocampal region33.16
24.43
A430041B07RiksAMYStriatum-like amygdalar nuclei9.51
7.15
A430041B07RikSTRStriatum10.4
7.03
A430041B07RikSTRdStriatum dorsal region11.72
8.03
A430041B07RikSTRvStriatum ventral region8.63
5.09
A430041B07RikTHThalamus13.49
11.46
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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