AutismKB 2.0

Annotation Detail for ATP10B


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Basic Information Top
Gene Symbol:ATP10B ( ATPVB,FLJ21477,KIAA0715 )
Gene Full Name: ATPase, class V, type 10B
Band: 5q34
Quick LinksEntrez ID:23120; OMIM: NA; Uniprot ID:AT10B_HUMAN; ENSEMBL ID: ENSG00000118322; HGNC ID: 13543
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus1 / 5640121
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult20 / 193912110
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor7 / 11424661
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor1 / 2638453
glioma0 / 1068830 
head and neck tumor0 / 1363020 
kidney tumor2 / 6895929
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia2 / 9725020
normal33 / 33603079
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor1 / 1249498
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor1 / 9025711
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone0 / 716550 
bone marrow0 / 488010 
brain23 / 110098920
cervix0 / 481710 
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus0 / 202090 
eye4 / 21105418
heart0 / 896260 
intestine16 / 23447268
kidney3 / 21177714
larynx0 / 241450 
liver0 / 2077430 
lung4 / 33697411
lymph0 / 442700 
lymph node0 / 916100 
mammary gland0 / 1532710 
mouth0 / 670520 
muscle1 / 1077159
nerve0 / 157680 
ovary0 / 1020510 
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta1 / 2808253
prostate0 / 1893450 
salivary gland0 / 201550 
skin3 / 21057414
spleen0 / 539520 
stomach0 / 966190 
testis0 / 3304420 
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus1 / 2328784
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 214070_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts9.55
Adipocyte27.65
AdrenalCortex27.5
Adrenalgland23.3
Amygdala29.7
Appendix50.7
AtrioventricularNode27.5
BDCA4+_DentriticCells4.65
Bonemarrow29.85
BronchialEpithelialCells26.05
CD105+_Endothelial4.85
CD14+_Monocytes6.45
CD19+_BCells(neg._sel.)9.15
CD33+_Myeloid5.55
CD34+6.9
CD4+_Tcells5.65
CD56+_NKCells5.4
CD71+_EarlyErythroid7.7
CD8+_Tcells6.35
CardiacMyocytes32.15
Caudatenucleus37.4
Cerebellum35.65
CerebellumPeduncles42.75
CiliaryGanglion22.7
CingulateCortex28.35
Colorectaladenocarcinoma26.4
DorsalRootGanglion20.75
FetalThyroid27.05
Fetalbrain28.15
Fetalliver24.45
Fetallung21.5
GlobusPallidus26.4
Heart58.55
Hypothalamus75.2
Kidney36.05
Leukemia_chronicMyelogenousK-56223.95
Leukemia_promyelocytic-HL-6023.85
Leukemialymphoblastic(MOLT-4)22.5
Liver36.3
Lung30
Lymphnode23.45
Lymphoma_burkitts(Daudi)35.3
Lymphoma_burkitts(Raji)37.15
MedullaOblongata57.9
OccipitalLobe37.75
OlfactoryBulb26.85
Ovary18.25
Pancreas31.65
PancreaticIslet30.5
ParietalLobe51.75
Pituitary32.65
Placenta27.55
Pons63.4
PrefrontalCortex35.45
Prostate31
Salivarygland27.75
SkeletalMuscle30.65
Skin20.9
SmoothMuscle28.15
Spinalcord71.55
SubthalamicNucleus30.65
SuperiorCervicalGanglion35.2
TemporalLobe33.1
Testis33.7
TestisGermCell23.8
TestisIntersitial22
TestisLeydigCell30
TestisSeminiferousTubule23.15
Thalamus49.05
Thymus28.55
Thyroid33.9
Tongue35.65
Tonsil27.05
Trachea26.2
TrigeminalGanglion27.85
Uterus21.75
UterusCorpus24.7
WholeBlood25.5
Wholebrain24.4
colon230.85
pineal_day24.22
pineal_night21.18
retina56.55
small_intestine126.3
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P311901
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala3.31 ± 1
Basal Forebrain3.42 ± 0.68
Basal Part of Pons3.44 ± 0.6
Cerebellar Cortex3.29 ± 0.6
Cerebellar Nuclei4.16 ± 0.69
Claustrum3.48 ± 0.67
Epithalamus2.94 ± 0.91
Frontal Lobe3.2 ± 0.89
Globus Pallidus4.58 ± 0.49
Hypothalamus3.01 ± 0.79
Insula2.73 ± 0.63
Limbic Lobe2.92 ± 0.79
Mesencephalon3.56 ± 1.04
Myelencephalon3.22 ± 0.86
Occipital Lobe3.32 ± 0.8
Parietal Lobe3.21 ± 0.8
Pontine Tegmentum3.61 ± 0.71
Striatum3.76 ± 0.8
Subthalamus3.41 ± 0.56
Temporal Lobe3.11 ± 0.77
Thalamus3.48 ± 0.68
White Matter5.89 ± 0.38
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
9030605H24RikCBCerebellum1.32
2.34
9030605H24RikCTXCerebral cortex0.74
0.89
9030605H24RikHIPHippocampal region0.86
0.95
9030605H24RikHPFHippocampal formation1.23
1.25
9030605H24RikHYHypothalamus0.22
0.19
9030605H24RikLSXLateral septal complex0.28
0.22
9030605H24RikMBMidbrain0.36
0.4
9030605H24RikMYMedulla1.05
1.43
9030605H24RikOLFOlfactory bulb1.48
2.22
9030605H24RikPPons0.27
0.41
9030605H24RikPALPallidum0.46
0.45
9030605H24RikRHPRetrohippocampal region1.87
1.65
9030605H24RiksAMYStriatum-like amygdalar nuclei0.51
0.45
9030605H24RikSTRStriatum0.45
0.47
9030605H24RikSTRdStriatum dorsal region0.47
0.56
9030605H24RikSTRvStriatum ventral region0.51
0.31
9030605H24RikTHThalamus0.41
0.53
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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